Zinc in PDB 1fun: Superoxide Dismutase Mutant with Lys 136 Replaced By Glu, Cys 6 Replaced By Ala and Cys 111 Replaced By Ser (K136E, C6A, C111S)
Enzymatic activity of Superoxide Dismutase Mutant with Lys 136 Replaced By Glu, Cys 6 Replaced By Ala and Cys 111 Replaced By Ser (K136E, C6A, C111S)
All present enzymatic activity of Superoxide Dismutase Mutant with Lys 136 Replaced By Glu, Cys 6 Replaced By Ala and Cys 111 Replaced By Ser (K136E, C6A, C111S):
1.15.1.1;
Protein crystallography data
The structure of Superoxide Dismutase Mutant with Lys 136 Replaced By Glu, Cys 6 Replaced By Ala and Cys 111 Replaced By Ser (K136E, C6A, C111S), PDB code: 1fun
was solved by
T.P.Lo,
J.A.Tainer,
E.D.Getzoff,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
8.00 /
2.85
|
Space group
|
C 2 2 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
205.200,
167.000,
145.500,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
18.9 /
n/a
|
Other elements in 1fun:
The structure of Superoxide Dismutase Mutant with Lys 136 Replaced By Glu, Cys 6 Replaced By Ala and Cys 111 Replaced By Ser (K136E, C6A, C111S) also contains other interesting chemical elements:
Zinc Binding Sites:
The binding sites of Zinc atom in the Superoxide Dismutase Mutant with Lys 136 Replaced By Glu, Cys 6 Replaced By Ala and Cys 111 Replaced By Ser (K136E, C6A, C111S)
(pdb code 1fun). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 10 binding sites of Zinc where determined in the
Superoxide Dismutase Mutant with Lys 136 Replaced By Glu, Cys 6 Replaced By Ala and Cys 111 Replaced By Ser (K136E, C6A, C111S), PDB code: 1fun:
Jump to Zinc binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Zinc binding site 1 out
of 10 in 1fun
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Zinc Binding Sites List in 1fun
Zinc binding site 1 out
of 10 in the Superoxide Dismutase Mutant with Lys 136 Replaced By Glu, Cys 6 Replaced By Ala and Cys 111 Replaced By Ser (K136E, C6A, C111S)
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Superoxide Dismutase Mutant with Lys 136 Replaced By Glu, Cys 6 Replaced By Ala and Cys 111 Replaced By Ser (K136E, C6A, C111S) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn155
b:40.6
occ:1.00
|
OD1
|
A:ASP83
|
1.9
|
37.0
|
1.0
|
ND1
|
A:HIS63
|
2.0
|
35.7
|
1.0
|
ND1
|
A:HIS71
|
2.0
|
40.0
|
1.0
|
ND1
|
A:HIS80
|
2.1
|
38.0
|
1.0
|
CG
|
A:ASP83
|
2.7
|
32.6
|
1.0
|
CE1
|
A:HIS71
|
2.7
|
37.9
|
1.0
|
OD2
|
A:ASP83
|
2.8
|
35.5
|
1.0
|
CE1
|
A:HIS63
|
2.9
|
35.9
|
1.0
|
CE1
|
A:HIS80
|
3.0
|
37.8
|
1.0
|
CG
|
A:HIS63
|
3.0
|
29.9
|
1.0
|
CG
|
A:HIS80
|
3.1
|
37.3
|
1.0
|
CG
|
A:HIS71
|
3.2
|
40.1
|
1.0
|
CB
|
A:HIS63
|
3.3
|
27.6
|
1.0
|
CB
|
A:HIS80
|
3.5
|
35.1
|
1.0
|
CB
|
A:HIS71
|
3.8
|
38.7
|
1.0
|
NE2
|
A:HIS71
|
3.9
|
39.1
|
1.0
|
O
|
A:GLU136
|
4.0
|
54.7
|
1.0
|
NE2
|
A:HIS63
|
4.0
|
37.2
|
1.0
|
CD2
|
A:HIS63
|
4.1
|
34.1
|
1.0
|
NE2
|
A:HIS80
|
4.1
|
39.0
|
1.0
|
CB
|
A:ASP83
|
4.1
|
26.1
|
1.0
|
CA
|
A:HIS71
|
4.2
|
38.0
|
1.0
|
CD2
|
A:HIS71
|
4.2
|
37.5
|
1.0
|
CD2
|
A:HIS80
|
4.2
|
37.2
|
1.0
|
CA
|
A:ASP83
|
4.7
|
24.0
|
1.0
|
N
|
A:ASP83
|
4.8
|
23.9
|
1.0
|
CA
|
A:HIS80
|
4.9
|
33.8
|
1.0
|
CA
|
A:HIS63
|
4.9
|
23.3
|
1.0
|
N
|
A:GLY72
|
4.9
|
37.1
|
1.0
|
N
|
A:HIS80
|
4.9
|
36.9
|
1.0
|
|
Zinc binding site 2 out
of 10 in 1fun
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Zinc Binding Sites List in 1fun
Zinc binding site 2 out
of 10 in the Superoxide Dismutase Mutant with Lys 136 Replaced By Glu, Cys 6 Replaced By Ala and Cys 111 Replaced By Ser (K136E, C6A, C111S)
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Superoxide Dismutase Mutant with Lys 136 Replaced By Glu, Cys 6 Replaced By Ala and Cys 111 Replaced By Ser (K136E, C6A, C111S) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Zn155
b:4.0
occ:1.00
|
ND1
|
F:HIS63
|
1.6
|
9.2
|
1.0
|
ND1
|
F:HIS80
|
1.9
|
7.4
|
1.0
|
OD1
|
F:ASP83
|
1.9
|
7.8
|
1.0
|
ND1
|
F:HIS71
|
1.9
|
9.3
|
1.0
|
CE1
|
F:HIS63
|
2.2
|
16.1
|
1.0
|
OD2
|
F:ASP83
|
2.3
|
11.1
|
1.0
|
CG
|
F:ASP83
|
2.4
|
5.9
|
1.0
|
CE1
|
F:HIS80
|
2.5
|
7.3
|
1.0
|
CE1
|
F:HIS71
|
2.8
|
11.2
|
1.0
|
CG
|
F:HIS63
|
2.9
|
8.9
|
1.0
|
CG
|
F:HIS80
|
3.1
|
6.0
|
1.0
|
CG
|
F:HIS71
|
3.1
|
14.6
|
1.0
|
NE2
|
F:HIS63
|
3.5
|
14.4
|
1.0
|
CB
|
F:HIS71
|
3.6
|
15.2
|
1.0
|
CB
|
F:HIS63
|
3.6
|
9.7
|
1.0
|
CB
|
F:HIS80
|
3.7
|
4.8
|
1.0
|
NE2
|
F:HIS80
|
3.7
|
8.2
|
1.0
|
CD2
|
F:HIS63
|
3.8
|
5.0
|
1.0
|
CB
|
F:ASP83
|
3.8
|
2.0
|
1.0
|
NE2
|
F:HIS71
|
4.0
|
11.0
|
1.0
|
CD2
|
F:HIS80
|
4.0
|
5.7
|
1.0
|
CA
|
F:HIS71
|
4.1
|
12.1
|
1.0
|
CD2
|
F:HIS71
|
4.1
|
11.8
|
1.0
|
O
|
F:GLU136
|
4.3
|
15.0
|
1.0
|
CA
|
F:ASP83
|
4.5
|
2.0
|
1.0
|
N
|
F:HIS80
|
4.7
|
4.7
|
1.0
|
O
|
F:HOH248
|
4.7
|
23.5
|
1.0
|
N
|
F:ASP83
|
4.8
|
2.0
|
1.0
|
N
|
F:GLY72
|
4.8
|
3.3
|
1.0
|
CA
|
F:HIS80
|
4.8
|
3.8
|
1.0
|
C
|
F:GLU136
|
5.0
|
10.4
|
1.0
|
C
|
F:HIS71
|
5.0
|
8.9
|
1.0
|
|
Zinc binding site 3 out
of 10 in 1fun
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Zinc Binding Sites List in 1fun
Zinc binding site 3 out
of 10 in the Superoxide Dismutase Mutant with Lys 136 Replaced By Glu, Cys 6 Replaced By Ala and Cys 111 Replaced By Ser (K136E, C6A, C111S)
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 3 of Superoxide Dismutase Mutant with Lys 136 Replaced By Glu, Cys 6 Replaced By Ala and Cys 111 Replaced By Ser (K136E, C6A, C111S) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Zn155
b:22.3
occ:1.00
|
ND1
|
B:HIS80
|
1.8
|
17.6
|
1.0
|
OD1
|
B:ASP83
|
1.9
|
14.3
|
1.0
|
ND1
|
B:HIS71
|
2.0
|
26.9
|
1.0
|
ND1
|
B:HIS63
|
2.2
|
26.0
|
1.0
|
CE1
|
B:HIS80
|
2.6
|
16.0
|
1.0
|
CG
|
B:ASP83
|
2.7
|
13.2
|
1.0
|
OD2
|
B:ASP83
|
2.8
|
19.2
|
1.0
|
CE1
|
B:HIS71
|
2.8
|
26.9
|
1.0
|
CG
|
B:HIS80
|
3.0
|
20.7
|
1.0
|
CE1
|
B:HIS63
|
3.1
|
28.1
|
1.0
|
CG
|
B:HIS71
|
3.1
|
29.7
|
1.0
|
CG
|
B:HIS63
|
3.2
|
22.3
|
1.0
|
CB
|
B:HIS80
|
3.5
|
21.3
|
1.0
|
CB
|
B:HIS63
|
3.6
|
19.6
|
1.0
|
CB
|
B:HIS71
|
3.6
|
31.8
|
1.0
|
O
|
B:GLU136
|
3.8
|
48.0
|
1.0
|
NE2
|
B:HIS80
|
3.8
|
19.9
|
1.0
|
CD2
|
B:HIS80
|
3.9
|
19.5
|
1.0
|
CA
|
B:HIS71
|
4.0
|
32.0
|
1.0
|
NE2
|
B:HIS71
|
4.0
|
26.6
|
1.0
|
CB
|
B:ASP83
|
4.1
|
8.7
|
1.0
|
CD2
|
B:HIS71
|
4.2
|
28.0
|
1.0
|
NE2
|
B:HIS63
|
4.2
|
29.2
|
1.0
|
CD2
|
B:HIS63
|
4.3
|
26.6
|
1.0
|
CA
|
B:ASP83
|
4.7
|
10.1
|
1.0
|
N
|
B:HIS80
|
4.8
|
25.5
|
1.0
|
CA
|
B:HIS80
|
4.8
|
20.7
|
1.0
|
N
|
B:ASP83
|
4.8
|
16.2
|
1.0
|
N
|
B:GLY72
|
4.8
|
27.3
|
1.0
|
C
|
B:GLU136
|
5.0
|
46.1
|
1.0
|
C
|
B:HIS71
|
5.0
|
30.9
|
1.0
|
|
Zinc binding site 4 out
of 10 in 1fun
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Zinc Binding Sites List in 1fun
Zinc binding site 4 out
of 10 in the Superoxide Dismutase Mutant with Lys 136 Replaced By Glu, Cys 6 Replaced By Ala and Cys 111 Replaced By Ser (K136E, C6A, C111S)
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 4 of Superoxide Dismutase Mutant with Lys 136 Replaced By Glu, Cys 6 Replaced By Ala and Cys 111 Replaced By Ser (K136E, C6A, C111S) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Zn155
b:10.2
occ:1.00
|
ND1
|
G:HIS80
|
1.9
|
10.4
|
1.0
|
OD1
|
G:ASP83
|
2.0
|
2.0
|
1.0
|
ND1
|
G:HIS71
|
2.0
|
7.6
|
1.0
|
ND1
|
G:HIS63
|
2.1
|
12.4
|
1.0
|
CG
|
G:ASP83
|
2.6
|
2.0
|
1.0
|
CE1
|
G:HIS71
|
2.6
|
8.9
|
1.0
|
OD2
|
G:ASP83
|
2.7
|
4.7
|
1.0
|
CE1
|
G:HIS80
|
2.7
|
13.4
|
1.0
|
CE1
|
G:HIS63
|
3.0
|
16.6
|
1.0
|
CG
|
G:HIS80
|
3.0
|
12.1
|
1.0
|
CG
|
G:HIS63
|
3.2
|
11.3
|
1.0
|
CG
|
G:HIS71
|
3.2
|
10.2
|
1.0
|
CB
|
G:HIS80
|
3.5
|
13.6
|
1.0
|
CB
|
G:HIS63
|
3.6
|
9.2
|
1.0
|
CB
|
G:HIS71
|
3.8
|
11.3
|
1.0
|
NE2
|
G:HIS80
|
3.9
|
15.3
|
1.0
|
NE2
|
G:HIS71
|
3.9
|
13.5
|
1.0
|
CD2
|
G:HIS80
|
4.0
|
13.1
|
1.0
|
O
|
G:GLU136
|
4.1
|
20.5
|
1.0
|
CB
|
G:ASP83
|
4.1
|
2.0
|
1.0
|
NE2
|
G:HIS63
|
4.2
|
15.8
|
1.0
|
CD2
|
G:HIS71
|
4.2
|
7.5
|
1.0
|
CA
|
G:HIS71
|
4.2
|
8.9
|
1.0
|
CD2
|
G:HIS63
|
4.3
|
15.6
|
1.0
|
N
|
G:HIS80
|
4.6
|
9.9
|
1.0
|
CA
|
G:ASP83
|
4.6
|
2.0
|
1.0
|
CA
|
G:HIS80
|
4.7
|
8.5
|
1.0
|
O
|
G:HOH269
|
4.8
|
28.4
|
1.0
|
N
|
G:GLY72
|
4.8
|
2.0
|
1.0
|
N
|
G:ASP83
|
4.9
|
4.5
|
1.0
|
C
|
G:GLU136
|
5.0
|
11.7
|
1.0
|
|
Zinc binding site 5 out
of 10 in 1fun
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Zinc Binding Sites List in 1fun
Zinc binding site 5 out
of 10 in the Superoxide Dismutase Mutant with Lys 136 Replaced By Glu, Cys 6 Replaced By Ala and Cys 111 Replaced By Ser (K136E, C6A, C111S)
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 5 of Superoxide Dismutase Mutant with Lys 136 Replaced By Glu, Cys 6 Replaced By Ala and Cys 111 Replaced By Ser (K136E, C6A, C111S) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Zn155
b:21.6
occ:1.00
|
ND1
|
C:HIS80
|
1.9
|
18.9
|
1.0
|
OD1
|
C:ASP83
|
1.9
|
15.7
|
1.0
|
ND1
|
C:HIS63
|
2.0
|
19.5
|
1.0
|
ND1
|
C:HIS71
|
2.0
|
22.1
|
1.0
|
CE1
|
C:HIS80
|
2.6
|
19.6
|
1.0
|
CE1
|
C:HIS71
|
2.7
|
22.8
|
1.0
|
CG
|
C:ASP83
|
2.8
|
14.4
|
1.0
|
CE1
|
C:HIS63
|
2.8
|
17.8
|
1.0
|
OD2
|
C:ASP83
|
3.0
|
16.8
|
1.0
|
CG
|
C:HIS63
|
3.1
|
16.4
|
1.0
|
CG
|
C:HIS80
|
3.1
|
18.4
|
1.0
|
CG
|
C:HIS71
|
3.2
|
21.1
|
1.0
|
CB
|
C:HIS63
|
3.5
|
15.5
|
1.0
|
CB
|
C:HIS80
|
3.7
|
19.0
|
1.0
|
CB
|
C:HIS71
|
3.8
|
18.0
|
1.0
|
NE2
|
C:HIS80
|
3.8
|
19.3
|
1.0
|
NE2
|
C:HIS71
|
3.9
|
23.1
|
1.0
|
O
|
C:GLU136
|
4.0
|
31.9
|
1.0
|
NE2
|
C:HIS63
|
4.0
|
20.3
|
1.0
|
CD2
|
C:HIS80
|
4.1
|
18.7
|
1.0
|
CA
|
C:HIS71
|
4.1
|
18.7
|
1.0
|
CD2
|
C:HIS63
|
4.1
|
19.3
|
1.0
|
CD2
|
C:HIS71
|
4.1
|
21.4
|
1.0
|
CB
|
C:ASP83
|
4.2
|
13.3
|
1.0
|
N
|
C:HIS80
|
4.7
|
22.4
|
1.0
|
CA
|
C:ASP83
|
4.8
|
11.6
|
1.0
|
CA
|
C:HIS80
|
4.8
|
20.3
|
1.0
|
N
|
C:GLY72
|
4.8
|
12.6
|
1.0
|
N
|
C:HIS71
|
5.0
|
19.2
|
1.0
|
O
|
C:HOH391
|
5.0
|
44.0
|
1.0
|
C
|
C:GLU136
|
5.0
|
32.2
|
1.0
|
|
Zinc binding site 6 out
of 10 in 1fun
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Zinc Binding Sites List in 1fun
Zinc binding site 6 out
of 10 in the Superoxide Dismutase Mutant with Lys 136 Replaced By Glu, Cys 6 Replaced By Ala and Cys 111 Replaced By Ser (K136E, C6A, C111S)
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 6 of Superoxide Dismutase Mutant with Lys 136 Replaced By Glu, Cys 6 Replaced By Ala and Cys 111 Replaced By Ser (K136E, C6A, C111S) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Zn155
b:13.2
occ:1.00
|
OD1
|
H:ASP83
|
1.9
|
2.0
|
1.0
|
ND1
|
H:HIS80
|
1.9
|
12.7
|
1.0
|
ND1
|
H:HIS71
|
1.9
|
2.0
|
1.0
|
ND1
|
H:HIS63
|
2.0
|
10.4
|
1.0
|
CG
|
H:ASP83
|
2.7
|
2.0
|
1.0
|
CE1
|
H:HIS80
|
2.7
|
14.7
|
1.0
|
OD2
|
H:ASP83
|
2.8
|
8.1
|
1.0
|
CE1
|
H:HIS63
|
2.8
|
14.0
|
1.0
|
CE1
|
H:HIS71
|
2.8
|
8.8
|
1.0
|
CG
|
H:HIS71
|
3.0
|
5.4
|
1.0
|
CG
|
H:HIS63
|
3.1
|
6.9
|
1.0
|
CG
|
H:HIS80
|
3.1
|
14.7
|
1.0
|
CB
|
H:HIS71
|
3.5
|
4.2
|
1.0
|
CB
|
H:HIS63
|
3.6
|
4.5
|
1.0
|
CB
|
H:HIS80
|
3.7
|
12.9
|
1.0
|
NE2
|
H:HIS80
|
3.9
|
15.6
|
1.0
|
CA
|
H:HIS71
|
3.9
|
2.0
|
1.0
|
NE2
|
H:HIS63
|
4.0
|
11.5
|
1.0
|
NE2
|
H:HIS71
|
4.0
|
2.0
|
1.0
|
O
|
H:GLU136
|
4.0
|
24.6
|
1.0
|
CB
|
H:ASP83
|
4.1
|
2.0
|
1.0
|
CD2
|
H:HIS71
|
4.1
|
2.0
|
1.0
|
CD2
|
H:HIS80
|
4.1
|
15.6
|
1.0
|
CD2
|
H:HIS63
|
4.1
|
7.7
|
1.0
|
CA
|
H:ASP83
|
4.6
|
2.0
|
1.0
|
N
|
H:ASP83
|
4.7
|
2.0
|
1.0
|
N
|
H:GLY72
|
4.8
|
2.0
|
1.0
|
N
|
H:HIS80
|
4.8
|
12.5
|
1.0
|
N
|
H:HIS71
|
4.9
|
8.0
|
1.0
|
CA
|
H:HIS80
|
4.9
|
10.3
|
1.0
|
C
|
H:HIS71
|
4.9
|
2.0
|
1.0
|
C
|
H:GLU136
|
4.9
|
19.1
|
1.0
|
|
Zinc binding site 7 out
of 10 in 1fun
Go back to
Zinc Binding Sites List in 1fun
Zinc binding site 7 out
of 10 in the Superoxide Dismutase Mutant with Lys 136 Replaced By Glu, Cys 6 Replaced By Ala and Cys 111 Replaced By Ser (K136E, C6A, C111S)
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 7 of Superoxide Dismutase Mutant with Lys 136 Replaced By Glu, Cys 6 Replaced By Ala and Cys 111 Replaced By Ser (K136E, C6A, C111S) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Zn155
b:50.0
occ:1.00
|
ND1
|
D:HIS63
|
2.0
|
41.4
|
1.0
|
ND1
|
D:HIS71
|
2.1
|
47.4
|
1.0
|
ND1
|
D:HIS80
|
2.2
|
46.6
|
1.0
|
OD1
|
D:ASP83
|
2.2
|
45.1
|
1.0
|
CE1
|
D:HIS71
|
2.6
|
47.8
|
1.0
|
CE1
|
D:HIS63
|
2.8
|
39.2
|
1.0
|
CG
|
D:ASP83
|
2.8
|
42.6
|
1.0
|
CG
|
D:HIS71
|
2.9
|
48.4
|
1.0
|
OD2
|
D:ASP83
|
2.9
|
45.0
|
1.0
|
CE1
|
D:HIS80
|
3.0
|
48.9
|
1.0
|
CG
|
D:HIS63
|
3.2
|
38.3
|
1.0
|
CG
|
D:HIS80
|
3.3
|
46.7
|
1.0
|
NE2
|
D:HIS71
|
3.4
|
49.0
|
1.0
|
CB
|
D:HIS71
|
3.6
|
49.0
|
1.0
|
CD2
|
D:HIS71
|
3.6
|
49.6
|
1.0
|
CB
|
D:HIS63
|
3.7
|
38.9
|
1.0
|
O
|
D:GLU136
|
3.7
|
56.8
|
1.0
|
CB
|
D:HIS80
|
3.8
|
44.8
|
1.0
|
NE2
|
D:HIS63
|
4.0
|
39.6
|
1.0
|
CA
|
D:HIS71
|
4.1
|
49.0
|
1.0
|
NE2
|
D:HIS80
|
4.1
|
49.8
|
1.0
|
CD2
|
D:HIS63
|
4.2
|
40.7
|
1.0
|
CB
|
D:ASP83
|
4.2
|
38.8
|
1.0
|
CD2
|
D:HIS80
|
4.3
|
47.8
|
1.0
|
O
|
D:THR137
|
4.6
|
55.9
|
1.0
|
N
|
D:GLY72
|
4.6
|
48.1
|
1.0
|
N
|
D:HIS80
|
4.9
|
47.2
|
1.0
|
CA
|
D:ASP83
|
4.9
|
36.1
|
1.0
|
C
|
D:GLU136
|
4.9
|
56.4
|
1.0
|
C
|
D:HIS71
|
4.9
|
48.6
|
1.0
|
CA
|
D:HIS80
|
5.0
|
45.8
|
1.0
|
O
|
D:GLY82
|
5.0
|
42.3
|
1.0
|
|
Zinc binding site 8 out
of 10 in 1fun
Go back to
Zinc Binding Sites List in 1fun
Zinc binding site 8 out
of 10 in the Superoxide Dismutase Mutant with Lys 136 Replaced By Glu, Cys 6 Replaced By Ala and Cys 111 Replaced By Ser (K136E, C6A, C111S)
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 8 of Superoxide Dismutase Mutant with Lys 136 Replaced By Glu, Cys 6 Replaced By Ala and Cys 111 Replaced By Ser (K136E, C6A, C111S) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Zn155
b:17.4
occ:1.00
|
ND1
|
I:HIS80
|
1.7
|
19.4
|
1.0
|
OD1
|
I:ASP83
|
1.8
|
11.9
|
1.0
|
ND1
|
I:HIS71
|
1.8
|
9.6
|
1.0
|
ND1
|
I:HIS63
|
1.9
|
17.6
|
1.0
|
CE1
|
I:HIS80
|
2.3
|
20.9
|
1.0
|
CG
|
I:ASP83
|
2.6
|
10.8
|
1.0
|
CE1
|
I:HIS71
|
2.6
|
12.1
|
1.0
|
CE1
|
I:HIS63
|
2.6
|
21.8
|
1.0
|
OD2
|
I:ASP83
|
2.8
|
15.5
|
1.0
|
CG
|
I:HIS80
|
3.0
|
18.6
|
1.0
|
CG
|
I:HIS71
|
3.0
|
17.4
|
1.0
|
CG
|
I:HIS63
|
3.0
|
14.2
|
1.0
|
NE2
|
I:HIS80
|
3.6
|
21.4
|
1.0
|
CB
|
I:HIS71
|
3.6
|
20.7
|
1.0
|
CB
|
I:HIS63
|
3.6
|
14.3
|
1.0
|
CB
|
I:HIS80
|
3.7
|
15.9
|
1.0
|
NE2
|
I:HIS71
|
3.8
|
15.2
|
1.0
|
NE2
|
I:HIS63
|
3.8
|
22.3
|
1.0
|
CD2
|
I:HIS80
|
3.9
|
19.8
|
1.0
|
CB
|
I:ASP83
|
4.0
|
7.5
|
1.0
|
CD2
|
I:HIS71
|
4.0
|
14.2
|
1.0
|
CD2
|
I:HIS63
|
4.0
|
17.9
|
1.0
|
CA
|
I:HIS71
|
4.1
|
20.4
|
1.0
|
O
|
I:GLU136
|
4.4
|
17.8
|
1.0
|
CA
|
I:ASP83
|
4.5
|
8.6
|
1.0
|
N
|
I:ASP83
|
4.7
|
6.5
|
1.0
|
N
|
I:HIS80
|
4.8
|
14.0
|
1.0
|
N
|
I:GLY72
|
4.8
|
16.9
|
1.0
|
CA
|
I:HIS80
|
4.8
|
15.0
|
1.0
|
C
|
I:HIS71
|
5.0
|
20.3
|
1.0
|
|
Zinc binding site 9 out
of 10 in 1fun
Go back to
Zinc Binding Sites List in 1fun
Zinc binding site 9 out
of 10 in the Superoxide Dismutase Mutant with Lys 136 Replaced By Glu, Cys 6 Replaced By Ala and Cys 111 Replaced By Ser (K136E, C6A, C111S)
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 9 of Superoxide Dismutase Mutant with Lys 136 Replaced By Glu, Cys 6 Replaced By Ala and Cys 111 Replaced By Ser (K136E, C6A, C111S) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Zn155
b:55.7
occ:1.00
|
OD1
|
E:ASP83
|
2.1
|
48.0
|
1.0
|
ND1
|
E:HIS80
|
2.2
|
51.2
|
1.0
|
ND1
|
E:HIS63
|
2.2
|
50.3
|
1.0
|
ND1
|
E:HIS71
|
2.5
|
58.9
|
1.0
|
OD2
|
E:ASP83
|
2.6
|
50.1
|
1.0
|
CG
|
E:ASP83
|
2.6
|
49.9
|
1.0
|
CE1
|
E:HIS71
|
2.8
|
59.4
|
1.0
|
CE1
|
E:HIS63
|
3.0
|
49.6
|
1.0
|
CG
|
E:HIS80
|
3.0
|
52.0
|
1.0
|
CE1
|
E:HIS80
|
3.1
|
50.6
|
1.0
|
CG
|
E:HIS63
|
3.1
|
49.8
|
1.0
|
CG
|
E:HIS71
|
3.3
|
58.8
|
1.0
|
CB
|
E:HIS80
|
3.4
|
54.4
|
1.0
|
CB
|
E:HIS63
|
3.5
|
49.2
|
1.0
|
NE2
|
E:HIS71
|
3.6
|
60.4
|
1.0
|
O
|
E:GLU136
|
3.7
|
60.3
|
1.0
|
CD2
|
E:HIS71
|
3.9
|
59.8
|
1.0
|
NE2
|
E:HIS63
|
4.1
|
51.1
|
1.0
|
CB
|
E:HIS71
|
4.1
|
56.9
|
1.0
|
CB
|
E:ASP83
|
4.1
|
49.3
|
1.0
|
CD2
|
E:HIS63
|
4.1
|
51.3
|
1.0
|
CD2
|
E:HIS80
|
4.1
|
52.2
|
1.0
|
NE2
|
E:HIS80
|
4.1
|
52.5
|
1.0
|
CA
|
E:HIS71
|
4.2
|
58.8
|
1.0
|
CA
|
E:HIS80
|
4.6
|
57.4
|
1.0
|
N
|
E:HIS80
|
4.6
|
58.9
|
1.0
|
CA
|
E:ASP83
|
4.8
|
49.1
|
1.0
|
O
|
E:HOH209
|
4.8
|
34.4
|
1.0
|
O
|
E:THR137
|
4.9
|
56.6
|
1.0
|
C
|
E:GLU136
|
4.9
|
61.1
|
1.0
|
N
|
E:GLY72
|
5.0
|
60.5
|
1.0
|
|
Zinc binding site 10 out
of 10 in 1fun
Go back to
Zinc Binding Sites List in 1fun
Zinc binding site 10 out
of 10 in the Superoxide Dismutase Mutant with Lys 136 Replaced By Glu, Cys 6 Replaced By Ala and Cys 111 Replaced By Ser (K136E, C6A, C111S)
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 10 of Superoxide Dismutase Mutant with Lys 136 Replaced By Glu, Cys 6 Replaced By Ala and Cys 111 Replaced By Ser (K136E, C6A, C111S) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Zn155
b:36.9
occ:1.00
|
ND1
|
J:HIS80
|
2.0
|
23.4
|
1.0
|
OD1
|
J:ASP83
|
2.0
|
24.7
|
1.0
|
ND1
|
J:HIS71
|
2.1
|
28.8
|
1.0
|
ND1
|
J:HIS63
|
2.3
|
37.6
|
1.0
|
CE1
|
J:HIS80
|
2.7
|
23.5
|
1.0
|
CE1
|
J:HIS71
|
2.8
|
29.4
|
1.0
|
CG
|
J:ASP83
|
2.8
|
26.8
|
1.0
|
OD2
|
J:ASP83
|
3.0
|
27.4
|
1.0
|
CG
|
J:HIS71
|
3.1
|
28.2
|
1.0
|
CG
|
J:HIS63
|
3.1
|
36.8
|
1.0
|
CE1
|
J:HIS63
|
3.2
|
38.8
|
1.0
|
CG
|
J:HIS80
|
3.2
|
25.1
|
1.0
|
CB
|
J:HIS63
|
3.5
|
35.0
|
1.0
|
CB
|
J:HIS71
|
3.7
|
28.0
|
1.0
|
CB
|
J:HIS80
|
3.7
|
30.1
|
1.0
|
O
|
J:GLU136
|
3.8
|
31.6
|
1.0
|
NE2
|
J:HIS71
|
3.9
|
26.1
|
1.0
|
NE2
|
J:HIS80
|
3.9
|
20.9
|
1.0
|
CA
|
J:HIS71
|
4.1
|
29.1
|
1.0
|
CD2
|
J:HIS71
|
4.1
|
27.0
|
1.0
|
CD2
|
J:HIS80
|
4.1
|
23.0
|
1.0
|
NE2
|
J:HIS63
|
4.2
|
38.9
|
1.0
|
CB
|
J:ASP83
|
4.2
|
26.4
|
1.0
|
CD2
|
J:HIS63
|
4.2
|
38.1
|
1.0
|
CA
|
J:ASP83
|
4.7
|
28.7
|
1.0
|
N
|
J:HIS80
|
4.8
|
35.3
|
1.0
|
CD2
|
J:HIS46
|
4.9
|
38.2
|
1.0
|
N
|
J:GLY72
|
4.9
|
27.0
|
1.0
|
N
|
J:ASP83
|
4.9
|
29.9
|
1.0
|
CA
|
J:HIS80
|
4.9
|
33.6
|
1.0
|
C
|
J:GLU136
|
4.9
|
31.6
|
1.0
|
|
Reference:
C.L.Fisher,
D.E.Cabelli,
R.A.Hallewell,
P.Beroza,
T.P.Lo,
E.D.Getzoff,
J.A.Tainer.
Computational, Pulse-Radiolytic, and Structural Investigations of Lysine-136 and Its Role in the Electrostatic Triad of Human Cu,Zn Superoxide Dismutase. Proteins V. 29 103 1997.
ISSN: ISSN 0887-3585
PubMed: 9294870
DOI: 10.1002/(SICI)1097-0134(199709)29:1<103::AID-PROT8>3.0.CO;2-G
Page generated: Sun Oct 13 01:11:35 2024
|