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Zinc in PDB 1far: Raf-1 Cysteine Rich Domain, uc(Nmr), Minimized Average Structure

Zinc Binding Sites:

The binding sites of Zinc atom in the Raf-1 Cysteine Rich Domain, uc(Nmr), Minimized Average Structure (pdb code 1far). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Raf-1 Cysteine Rich Domain, uc(Nmr), Minimized Average Structure, PDB code: 1far:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 1far

Go back to Zinc Binding Sites List in 1far
Zinc binding site 1 out of 2 in the Raf-1 Cysteine Rich Domain, uc(Nmr), Minimized Average Structure


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Raf-1 Cysteine Rich Domain, uc(Nmr), Minimized Average Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1

b:0.4
occ:1.00
ND1 A:HIS173 2.1 0.4 1.0
SG A:CYS152 2.4 0.3 1.0
H A:HIS173 2.4 0.4 1.0
SG A:CYS155 2.4 0.4 1.0
SG A:CYS176 2.5 0.7 1.0
CE1 A:HIS173 2.9 0.4 1.0
HB2 A:HIS175 3.0 0.6 1.0
HB A:ILE154 3.0 0.4 1.0
HE1 A:HIS173 3.1 0.4 1.0
CG A:HIS173 3.2 0.4 1.0
HB2 A:PHE172 3.2 1.0 1.0
N A:HIS173 3.3 0.3 1.0
HB2 A:HIS173 3.5 0.4 1.0
H A:CYS155 3.6 0.4 1.0
CB A:CYS152 3.7 0.3 1.0
CB A:HIS173 3.7 0.4 1.0
HG23 A:ILE154 3.8 1.1 1.0
CB A:CYS155 3.8 0.4 1.0
HB2 A:CYS155 3.8 0.3 1.0
HB3 A:CYS152 3.8 0.3 1.0
HB2 A:CYS152 3.9 0.4 1.0
NE2 A:HIS173 4.0 0.4 1.0
CB A:HIS175 4.0 0.7 1.0
CB A:ILE154 4.0 0.5 1.0
CA A:HIS173 4.0 0.4 1.0
H A:HIS175 4.0 0.6 1.0
HA A:PHE172 4.0 0.6 1.0
N A:CYS155 4.1 0.4 1.0
CD2 A:HIS173 4.1 0.4 1.0
CB A:PHE172 4.1 0.7 1.0
CB A:CYS176 4.3 0.5 1.0
HB3 A:PHE172 4.3 1.1 1.0
HB3 A:HIS175 4.3 0.7 1.0
C A:PHE172 4.3 0.4 1.0
CG2 A:ILE154 4.3 0.5 1.0
H A:CYS176 4.4 0.6 1.0
CA A:PHE172 4.4 0.4 1.0
C A:HIS173 4.5 0.5 1.0
HG13 A:ILE154 4.5 0.6 1.0
CA A:CYS155 4.5 0.4 1.0
HB2 A:CYS176 4.6 0.6 1.0
HB3 A:CYS155 4.6 0.4 1.0
N A:CYS176 4.6 0.5 1.0
HG22 A:ILE154 4.6 1.2 1.0
H A:ILE154 4.6 0.4 1.0
N A:HIS175 4.6 0.6 1.0
O A:HIS173 4.7 0.6 1.0
C A:ILE154 4.7 0.5 1.0
CA A:HIS175 4.7 0.6 1.0
HB3 A:HIS173 4.7 0.5 1.0
HA A:CYS155 4.8 0.5 1.0
C A:HIS175 4.8 0.6 1.0
HB3 A:CYS176 4.8 0.7 1.0
HE2 A:HIS173 4.8 0.4 1.0
HD23 A:LEU159 4.8 1.8 1.0
CG1 A:ILE154 4.9 0.5 1.0
CA A:ILE154 4.9 0.5 1.0
CG A:HIS175 4.9 0.8 1.0
CA A:CYS152 5.0 0.3 1.0
HA A:HIS173 5.0 0.4 1.0

Zinc binding site 2 out of 2 in 1far

Go back to Zinc Binding Sites List in 1far
Zinc binding site 2 out of 2 in the Raf-1 Cysteine Rich Domain, uc(Nmr), Minimized Average Structure


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Raf-1 Cysteine Rich Domain, uc(Nmr), Minimized Average Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn2

b:0.8
occ:1.00
ND1 A:HIS139 2.2 1.1 1.0
HE1 A:HIS139 2.2 1.6 1.0
HB2 A:CYS165 2.3 1.1 1.0
SG A:CYS184 2.4 2.4 1.0
SG A:CYS165 2.4 1.2 1.0
CE1 A:HIS139 2.4 1.4 1.0
SG A:CYS168 2.5 0.7 1.0
CB A:CYS165 2.5 0.5 1.0
HB3 A:CYS165 2.5 0.8 1.0
HB2 A:TYR170 2.7 0.6 1.0
CB A:CYS184 3.0 2.9 1.0
HA A:HIS139 3.1 1.3 1.0
HB2 A:CYS184 3.1 3.3 1.0
HB3 A:CYS184 3.1 3.4 1.0
H A:ASN140 3.2 0.9 1.0
CG A:HIS139 3.5 1.1 1.0
CB A:TYR170 3.7 0.6 1.0
NE2 A:HIS139 3.7 1.6 1.0
HB3 A:TYR170 3.9 0.7 1.0
H A:CYS168 4.0 0.6 1.0
CA A:CYS165 4.0 0.4 1.0
CA A:HIS139 4.0 1.1 1.0
CB A:CYS168 4.0 0.7 1.0
N A:ASN140 4.1 0.8 1.0
H A:TYR170 4.1 0.6 1.0
HD1 A:TYR170 4.1 2.2 1.0
HB3 A:CYS168 4.1 0.8 1.0
CD2 A:TYR170 4.2 1.5 1.0
CG A:TYR170 4.2 0.7 1.0
CD2 A:HIS139 4.2 1.4 1.0
HD2 A:TYR170 4.3 2.3 1.0
HE2 A:HIS139 4.4 2.0 1.0
CB A:HIS139 4.4 1.1 1.0
HA A:CYS165 4.4 0.4 1.0
CA A:CYS184 4.5 2.9 1.0
CD1 A:TYR170 4.5 1.4 1.0
H A:GLY169 4.6 0.6 1.0
H A:CYS165 4.6 0.5 1.0
C A:HIS139 4.6 1.0 1.0
HE1 A:TYR170 4.7 2.3 1.0
HB2 A:CYS168 4.7 1.0 1.0
N A:CYS168 4.7 0.6 1.0
H A:THR167 4.7 0.6 1.0
N A:TYR170 4.7 0.5 1.0
O A:ASN140 4.8 1.0 1.0
HA A:CYS184 4.8 2.9 1.0
HB2 A:ASN140 4.8 0.8 1.0
N A:CYS165 4.8 0.4 1.0
C A:CYS165 4.8 0.5 1.0
CA A:TYR170 4.9 0.5 1.0
CE1 A:TYR170 4.9 1.5 1.0
CA A:CYS168 5.0 0.7 1.0

Reference:

H.R.Mott, J.W.Carpenter, S.Zhong, S.Ghosh, R.M.Bell, S.L.Campbell. The Solution Structure of the Raf-1 Cysteine-Rich Domain: A Novel Ras and Phospholipid Binding Site. Proc.Natl.Acad.Sci.Usa V. 93 8312 1996.
ISSN: ISSN 0027-8424
PubMed: 8710867
DOI: 10.1073/PNAS.93.16.8312
Page generated: Wed Dec 16 02:49:07 2020

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