Zinc in PDB 1ee8: Crystal Structure of Mutm (Fpg) Protein From Thermus Thermophilus HB8

The structure of Crystal Structure of Mutm (Fpg) Protein From Thermus Thermophilus HB8, PDB code: 1ee8 was solved by M.Sugahara, T.Mikawa, T.Kumasaka, M.Yamamoto, R.Kato, K.Fukuyama, Y.Inoue, S.Kuramitsu, Riken Structural Genomics/Proteomics Initiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 1.90
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	44.421, 61.289, 98.342, 90.00, 91.71, 90.00
R / Rfree (%)	21.4 / 25.8

The binding sites of Zinc atom in the Crystal Structure of Mutm (Fpg) Protein From Thermus Thermophilus HB8 (pdb code 1ee8). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Mutm (Fpg) Protein From Thermus Thermophilus HB8, PDB code: 1ee8:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of Mutm (Fpg) Protein From Thermus Thermophilus HB8


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Mutm (Fpg) Protein From Thermus Thermophilus HB8 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn501 b:43.5 occ:1.00 SG A:CYS261 2.3 32.1 1.0 SG A:CYS241 2.3 34.6 1.0 SG A:CYS258 2.3 26.9 1.0 SG A:CYS238 2.3 28.4 1.0 CB A:CYS238 3.1 31.1 1.0 CB A:CYS261 3.2 32.1 1.0 CB A:CYS241 3.2 35.0 1.0 CB A:CYS258 3.4 28.8 1.0 N A:CYS241 3.6 33.6 1.0 N A:CYS261 3.9 33.5 1.0 CA A:CYS241 4.0 34.3 1.0 CA A:CYS261 4.2 33.0 1.0 CB A:ALA240 4.4 30.9 1.0 C A:ALA240 4.5 32.8 1.0 CA A:CYS238 4.6 32.0 1.0 C A:CYS241 4.7 35.1 1.0 CE1 A:PHE169 4.7 23.4 1.0 N A:ALA240 4.8 31.1 1.0 CA A:ALA240 4.8 32.5 1.0 N A:GLY242 4.8 35.1 1.0 CA A:CYS258 4.8 28.5 1.0 CB A:THR260 4.9 35.3 1.0 CB A:ARG243 5.0 40.6 1.0 N A:ARG243 5.0 37.7 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of Mutm (Fpg) Protein From Thermus Thermophilus HB8


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Mutm (Fpg) Protein From Thermus Thermophilus HB8 within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn502 b:36.9 occ:1.00 SG B:CYS258 2.3 22.9 1.0 SG B:CYS238 2.3 23.9 1.0 SG B:CYS261 2.4 25.1 1.0 SG B:CYS241 2.4 28.6 1.0 CB B:CYS238 3.1 24.3 1.0 CB B:CYS258 3.3 22.5 1.0 CB B:CYS261 3.4 23.5 1.0 CB B:CYS241 3.4 31.1 1.0 N B:CYS241 3.7 32.0 1.0 N B:CYS261 3.8 23.7 1.0 CA B:CYS241 4.1 31.3 1.0 CA B:CYS261 4.2 24.1 1.0 CB B:THR260 4.3 23.4 1.0 CB B:ALA240 4.4 30.8 1.0 CA B:CYS238 4.6 26.0 1.0 CE1 B:PHE169 4.6 19.6 1.0 C B:ALA240 4.6 32.4 1.0 CA B:CYS258 4.7 21.0 1.0 C B:THR260 4.8 23.8 1.0 C B:CYS241 4.8 30.7 1.0 CG2 B:THR260 4.8 24.4 1.0 CB B:ARG243 4.9 28.4 1.0 CA B:ALA240 4.9 31.4 1.0 N B:ALA240 4.9 30.9 1.0 N B:GLY242 5.0 30.0 1.0

M.Sugahara, T.Mikawa, T.Kumasaka, M.Yamamoto, R.Kato, K.Fukuyama, Y.Inoue, S.Kuramitsu. Crystal Structure of A Repair Enzyme of Oxidatively Damaged Dna, Mutm (Fpg), From An Extreme Thermophile, Thermus Thermophilus HB8. Embo J. V. 19 3857 2000.
ISSN: ISSN 0261-4189
PubMed: 10921868
DOI: 10.1093/EMBOJ/19.15.3857