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Zinc in PDB 1ebo: Crystal Structure of the Ebola Virus Membrane-Fusion Subunit, GP2, From the Envelope Glycoprotein Ectodomain

Protein crystallography data

The structure of Crystal Structure of the Ebola Virus Membrane-Fusion Subunit, GP2, From the Envelope Glycoprotein Ectodomain, PDB code: 1ebo was solved by W.Weissenhorn, A.Carfi, K.H.Lee, J.J.Skehel, D.C.Wiley, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 3.00
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 171.702, 32.691, 168.863, 90.00, 119.23, 90.00
R / Rfree (%) 23.9 / 25.6

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of the Ebola Virus Membrane-Fusion Subunit, GP2, From the Envelope Glycoprotein Ectodomain (pdb code 1ebo). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Crystal Structure of the Ebola Virus Membrane-Fusion Subunit, GP2, From the Envelope Glycoprotein Ectodomain, PDB code: 1ebo:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in 1ebo

Go back to Zinc Binding Sites List in 1ebo
Zinc binding site 1 out of 3 in the Crystal Structure of the Ebola Virus Membrane-Fusion Subunit, GP2, From the Envelope Glycoprotein Ectodomain


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Ebola Virus Membrane-Fusion Subunit, GP2, From the Envelope Glycoprotein Ectodomain within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn150

b:42.4
occ:1.00
NE2 D:HIS127 2.3 32.0 1.0
CE1 D:HIS127 3.2 32.0 1.0
CD2 D:HIS127 3.3 32.0 1.0
ND1 D:HIS127 4.3 32.0 1.0
CG D:HIS127 4.4 32.0 1.0

Zinc binding site 2 out of 3 in 1ebo

Go back to Zinc Binding Sites List in 1ebo
Zinc binding site 2 out of 3 in the Crystal Structure of the Ebola Virus Membrane-Fusion Subunit, GP2, From the Envelope Glycoprotein Ectodomain


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of the Ebola Virus Membrane-Fusion Subunit, GP2, From the Envelope Glycoprotein Ectodomain within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Zn150

b:42.4
occ:1.00
NE2 F:GLN3 2.8 46.4 1.0
CD F:GLN3 4.1 46.4 1.0
OE1 F:GLN3 4.7 46.4 1.0

Zinc binding site 3 out of 3 in 1ebo

Go back to Zinc Binding Sites List in 1ebo
Zinc binding site 3 out of 3 in the Crystal Structure of the Ebola Virus Membrane-Fusion Subunit, GP2, From the Envelope Glycoprotein Ectodomain


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of the Ebola Virus Membrane-Fusion Subunit, GP2, From the Envelope Glycoprotein Ectodomain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn150

b:42.4
occ:1.00
NE2 A:GLN3 2.8 31.8 1.0
CD A:GLN3 3.8 31.8 1.0
OE1 A:GLN3 4.5 31.8 1.0
CG A:GLN3 4.5 31.8 1.0
CB A:GLN3 4.9 31.8 1.0

Reference:

W.Weissenhorn, A.Carfi, K.H.Lee, J.J.Skehel, D.C.Wiley. Crystal Structure of the Ebola Virus Membrane Fusion Subunit, GP2, From the Envelope Glycoprotein Ectodomain. Mol.Cell V. 2 605 1998.
ISSN: ISSN 1097-2765
PubMed: 9844633
DOI: 10.1016/S1097-2765(00)80159-8
Page generated: Fri Sep 25 21:23:58 2020
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