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Zinc in PDB 1eb6: Deuterolysin From Aspergillus Oryzae

Enzymatic activity of Deuterolysin From Aspergillus Oryzae

All present enzymatic activity of Deuterolysin From Aspergillus Oryzae:
3.4.24.39;

Protein crystallography data

The structure of Deuterolysin From Aspergillus Oryzae, PDB code: 1eb6 was solved by K.E.Mcauley, Y.Jia-Xing, E.J.Dodson, J.Lehmbeck, P.R.Ostergaard, K.S.Wilson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 57.73 / 1.0
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 38.430, 34.764, 60.276, 90.00, 106.03, 90.00
R / Rfree (%) 10.4 / 12.6

Zinc Binding Sites:

The binding sites of Zinc atom in the Deuterolysin From Aspergillus Oryzae (pdb code 1eb6). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Deuterolysin From Aspergillus Oryzae, PDB code: 1eb6:

Zinc binding site 1 out of 1 in 1eb6

Go back to Zinc Binding Sites List in 1eb6
Zinc binding site 1 out of 1 in the Deuterolysin From Aspergillus Oryzae


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Deuterolysin From Aspergillus Oryzae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn178

b:8.3
occ:1.00
NE2 A:HIS128 2.1 7.7 1.0
O A:HOH2256 2.1 10.2 1.0
NE2 A:HIS132 2.1 7.7 1.0
OD1 A:ASP143 2.2 9.6 1.0
O A:HOH2255 2.2 14.2 1.0
OD2 A:ASP143 2.4 12.5 1.0
CG A:ASP143 2.6 9.9 1.0
CE1 A:HIS132 3.0 8.2 1.0
CE1 A:HIS128 3.0 7.9 1.0
CD2 A:HIS128 3.1 7.4 1.0
CD2 A:HIS132 3.1 7.3 1.0
OE2 A:GLU129 3.8 10.3 1.0
CB A:ASP143 4.1 9.5 1.0
ND1 A:HIS132 4.2 8.0 1.0
ND1 A:HIS128 4.2 7.8 1.0
O A:HOH2156 4.2 11.9 1.0
CG A:HIS128 4.2 6.6 1.0
O A:HOH2154 4.3 16.7 1.0
CB A:ALA163 4.3 7.0 1.0
CG A:HIS132 4.3 6.9 1.0
O A:HOH2194 4.3 22.4 1.0
OH A:TYR146 4.3 8.2 0.2
O A:HOH2237 4.5 9.1 1.0
CE2 A:TYR146 4.5 8.2 0.2
CD A:GLU129 4.5 8.4 1.0
OE1 A:GLU129 4.5 9.6 1.0
O A:HOH2212 4.8 24.1 1.0
CZ A:TYR146 4.8 6.9 0.2
O A:HOH2220 4.8 24.1 1.0
CA A:ASP143 4.9 8.5 1.0

Reference:

K.E.Mcauley, Y.Jia-Xing, E.J.Dodson, J.Lehmbeck, P.R.Ostergaard, K.S.Wilson. A Quick Solution: Ab Initio Structure Determination of A 19 kDa Metalloproteinase Using Acorn Acta Crystallogr.,Sect.D V. 57 1571 2001.
ISSN: ISSN 0907-4449
PubMed: 11679721
DOI: 10.1107/S090744490101335X
Page generated: Fri Sep 25 21:23:55 2020
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