Atomistry » Zinc » PDB 1e0e-1ed6 » 1eb3
Atomistry »
  Zinc »
    PDB 1e0e-1ed6 »
      1eb3 »

Zinc in PDB 1eb3: Yeast 5-Aminolaevulinic Acid Dehydratase 4,7-Dioxosebacic Acid Complex

Enzymatic activity of Yeast 5-Aminolaevulinic Acid Dehydratase 4,7-Dioxosebacic Acid Complex

All present enzymatic activity of Yeast 5-Aminolaevulinic Acid Dehydratase 4,7-Dioxosebacic Acid Complex:
4.2.1.24;

Protein crystallography data

The structure of Yeast 5-Aminolaevulinic Acid Dehydratase 4,7-Dioxosebacic Acid Complex, PDB code: 1eb3 was solved by P.T.Erskine, L.Coates, R.Newbold, A.A.Brindley, F.Stauffer, S.P.Wood, M.J.Warren, J.B.Cooper, P.M.Shoolingin-Jordan, R.Neier, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.30 / 1.75
Space group I 4 2 2
Cell size a, b, c (Å), α, β, γ (°) 104.300, 104.300, 167.200, 90.00, 90.00, 90.00
R / Rfree (%) 23.9 / 30.8

Zinc Binding Sites:

The binding sites of Zinc atom in the Yeast 5-Aminolaevulinic Acid Dehydratase 4,7-Dioxosebacic Acid Complex (pdb code 1eb3). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Yeast 5-Aminolaevulinic Acid Dehydratase 4,7-Dioxosebacic Acid Complex, PDB code: 1eb3:

Zinc binding site 1 out of 1 in 1eb3

Go back to Zinc Binding Sites List in 1eb3
Zinc binding site 1 out of 1 in the Yeast 5-Aminolaevulinic Acid Dehydratase 4,7-Dioxosebacic Acid Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Yeast 5-Aminolaevulinic Acid Dehydratase 4,7-Dioxosebacic Acid Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1342

b:24.9
occ:1.00
O A:HOH2402 2.0 24.7 1.0
SG A:CYS133 2.3 23.2 1.0
SG A:CYS135 2.3 26.6 1.0
SG A:CYS143 2.3 24.6 1.0
CB A:CYS135 3.3 17.0 1.0
CB A:CYS143 3.3 20.1 1.0
CB A:CYS133 3.3 10.5 1.0
CA A:CYS143 3.8 20.5 1.0
O A:HOH2281 4.0 21.5 1.0
N A:CYS135 4.0 24.2 1.0
O A:HOH2248 4.1 22.8 1.0
OG A:SER179 4.2 24.0 1.0
CA A:CYS135 4.3 22.6 1.0
O A:SER179 4.3 20.8 1.0
O A:HOH2251 4.5 24.4 1.0
O A:HOH2401 4.5 34.0 1.0
N A:CYS143 4.6 25.7 1.0
C8 A:DSB1341 4.6 39.7 1.0
CA A:CYS133 4.7 13.5 1.0
N A:LEU134 4.7 16.4 1.0
CA A:ASP180 4.8 20.0 1.0
C A:SER179 4.8 18.5 1.0
C A:CYS143 5.0 28.0 1.0
NE A:ARG232 5.0 36.6 1.0

Reference:

P.T.Erskine, L.Coates, R.Newbold, A.A.Brindley, F.Stauffer, S.P.Wood, M.J.Warren, J.B.Cooper, P.M.Shoolingin-Jordan, R.Neier. The X-Ray Structure of Yeast 5-Aminolaevulinic Acid Dehydratase Complexed with Two Diacid Inhibitors Febs Lett. V. 503 196 2001.
ISSN: ISSN 0014-5793
PubMed: 11513881
DOI: 10.1016/S0014-5793(01)02721-1
Page generated: Sun Oct 13 00:06:36 2024

Last articles

W in 8QLN
W in 8RJA
V in 8WTN
Te in 8QLN
Re in 9GHX
Rb in 8Z5C
Ni in 9C0T
Ni in 9C0S
Ni in 9GP1
Ni in 9FYO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy