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Zinc in PDB 1e87: Human CD69 - Trigonal Form

Protein crystallography data

The structure of Human CD69 - Trigonal Form, PDB code: 1e87 was solved by J.Tormo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.79 / 1.5
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 48.424, 48.424, 119.886, 90.00, 90.00, 120.00
R / Rfree (%) 22.9 / 24.5

Zinc Binding Sites:

The binding sites of Zinc atom in the Human CD69 - Trigonal Form (pdb code 1e87). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Human CD69 - Trigonal Form, PDB code: 1e87:

Zinc binding site 1 out of 1 in 1e87

Go back to Zinc Binding Sites List in 1e87
Zinc binding site 1 out of 1 in the Human CD69 - Trigonal Form


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Human CD69 - Trigonal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1001

b:28.9
occ:1.00
O A:HOH2106 1.8 26.8 1.0
O A:HOH2104 2.0 21.5 1.0
O A:HOH2105 2.1 28.9 1.0
ND1 A:HIS116 2.1 24.2 1.0
CE1 A:HIS116 3.1 24.5 1.0
CG A:HIS116 3.1 23.3 1.0
O A:HOH2004 3.4 29.2 1.0
CB A:HIS116 3.4 18.7 1.0
CA A:HIS116 3.8 14.7 1.0
NE2 A:HIS116 4.2 24.6 1.0
CD2 A:HIS116 4.2 23.3 1.0
O A:HOH2100 4.3 35.7 1.0
CZ2 A:TRP89 4.4 12.9 1.0
NE1 A:TRP89 4.6 16.1 1.0
O A:HIS116 4.7 15.6 1.0
C A:HIS116 4.8 14.4 1.0
N A:HIS116 4.8 13.2 1.0
CE2 A:TRP89 4.9 13.4 1.0

Reference:

A.S.Llera, F.Viedma, F.Sanchez-Madrid, J.Tormo. Crystal Structure of the C-Type Lectin-Like Domain From the Human Hematopoietic Cell Receptor CD69 J.Biol.Chem. V. 276 7312 2001.
ISSN: ISSN 0021-9258
PubMed: 11036086
DOI: 10.1074/JBC.M008573200
Page generated: Fri Sep 25 21:23:28 2020
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