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Zinc in PDB 1e4u: N-Terminal Ring Finger Domain of Human Not-4

Zinc Binding Sites:

The binding sites of Zinc atom in the N-Terminal Ring Finger Domain of Human Not-4 (pdb code 1e4u). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the N-Terminal Ring Finger Domain of Human Not-4, PDB code: 1e4u:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 1e4u

Go back to Zinc Binding Sites List in 1e4u
Zinc binding site 1 out of 2 in the N-Terminal Ring Finger Domain of Human Not-4


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of N-Terminal Ring Finger Domain of Human Not-4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn79

b:0.0
occ:1.00
SG A:CYS17 2.3 0.0 1.0
SG A:CYS38 2.3 0.0 1.0
SG A:CYS41 2.3 0.0 1.0
SG A:CYS14 2.3 0.0 1.0
H A:CYS38 2.7 0.0 1.0
HB3 A:CYS17 2.9 0.0 1.0
HB2 A:CYS41 3.0 0.0 1.0
H A:CYS17 3.0 0.0 1.0
HB3 A:CYS38 3.0 0.0 1.0
CB A:CYS17 3.2 0.0 1.0
HB3 A:CYS14 3.2 0.0 1.0
CB A:CYS41 3.2 0.0 1.0
CB A:CYS38 3.2 0.0 1.0
CB A:CYS14 3.3 0.0 1.0
HB2 A:CYS14 3.5 0.0 1.0
HB2 A:LEU16 3.5 0.0 1.0
N A:CYS38 3.6 0.0 1.0
N A:CYS17 3.6 0.0 1.0
H A:CYS41 3.7 0.0 1.0
HB3 A:LEU16 3.9 0.0 1.0
H A:MET18 3.9 0.0 1.0
CA A:CYS17 4.0 0.0 1.0
CA A:CYS38 4.0 0.0 1.0
HB3 A:CYS41 4.0 0.0 1.0
N A:CYS41 4.0 0.0 1.0
HB2 A:CYS17 4.1 0.0 1.0
HB A:ILE37 4.1 0.0 1.0
HB2 A:CYS38 4.1 0.0 1.0
CB A:LEU16 4.2 0.0 1.0
CA A:CYS41 4.2 0.0 1.0
H A:LEU16 4.2 0.0 1.0
HB2 A:PHE40 4.3 0.0 1.0
HB2 A:GLU19 4.3 0.0 1.0
C A:LEU16 4.5 0.0 1.0
HA A:ILE37 4.5 0.0 1.0
HA A:CYS41 4.5 0.0 1.0
N A:MET18 4.6 0.0 1.0
CA A:CYS14 4.7 0.0 1.0
C A:ILE37 4.7 0.0 1.0
H A:PHE40 4.7 0.0 1.0
C A:CYS17 4.7 0.0 1.0
C A:CYS38 4.7 0.0 1.0
CA A:LEU16 4.8 0.0 1.0
HA A:CYS17 4.9 0.0 1.0
N A:LEU16 4.9 0.0 1.0
C A:PHE40 4.9 0.0 1.0
HA A:CYS38 4.9 0.0 1.0
CA A:ILE37 5.0 0.0 1.0
CB A:ILE37 5.0 0.0 1.0
HA A:CYS14 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 1e4u

Go back to Zinc Binding Sites List in 1e4u
Zinc binding site 2 out of 2 in the N-Terminal Ring Finger Domain of Human Not-4


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of N-Terminal Ring Finger Domain of Human Not-4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn80

b:0.0
occ:1.00
SG A:CYS31 2.3 0.0 1.0
SG A:CYS33 2.3 0.0 1.0
SG A:CYS53 2.3 0.0 1.0
SG A:CYS56 2.3 0.0 1.0
HB3 A:CYS33 2.8 0.0 1.0
HB3 A:CYS31 3.0 0.0 1.0
HB3 A:CYS56 3.0 0.0 1.0
CB A:CYS31 3.1 0.0 1.0
CB A:CYS53 3.1 0.0 1.0
H A:CYS56 3.1 0.0 1.0
CB A:CYS33 3.1 0.0 1.0
HB2 A:CYS53 3.2 0.0 1.0
HB3 A:CYS53 3.2 0.0 1.0
CB A:CYS56 3.3 0.0 1.0
HB2 A:CYS31 3.4 0.0 1.0
HB3 A:TYR35 3.5 0.0 1.0
H A:CYS33 3.5 0.0 1.0
HB2 A:LYS58 3.5 0.0 1.0
N A:CYS56 3.8 0.0 1.0
HB2 A:CYS33 3.9 0.0 1.0
HB2 A:ALA55 4.1 0.0 1.0
CA A:CYS56 4.1 0.0 1.0
HB2 A:CYS56 4.1 0.0 1.0
N A:CYS33 4.2 0.0 1.0
CA A:CYS33 4.2 0.0 1.0
HD2 A:LYS58 4.3 0.0 1.0
H A:ARG57 4.3 0.0 1.0
HB2 A:TYR35 4.4 0.0 1.0
CB A:TYR35 4.4 0.0 1.0
H A:TYR35 4.4 0.0 1.0
HD2 A:TYR35 4.5 0.0 1.0
CA A:CYS31 4.5 0.0 1.0
H A:ALA55 4.5 0.0 1.0
CB A:LYS58 4.6 0.0 1.0
CA A:CYS53 4.6 0.0 1.0
H A:LYS58 4.6 0.0 1.0
HZ1 A:LYS58 4.6 0.0 1.0
C A:CYS56 4.7 0.0 1.0
HB1 A:ALA55 4.7 0.0 1.0
N A:ARG57 4.7 0.0 1.0
HG3 A:LYS58 4.7 0.0 1.0
HA A:CYS53 4.8 0.0 1.0
H A:THR32 4.8 0.0 1.0
CB A:ALA55 4.8 0.0 1.0
C A:CYS31 4.9 0.0 1.0
C A:ALA55 4.9 0.0 1.0
C A:CYS33 4.9 0.0 1.0
HA A:CYS31 4.9 0.0 1.0
N A:LYS58 5.0 0.0 1.0
N A:THR32 5.0 0.0 1.0

Reference:

H.Hanzawa, M.J.De Ruwe, T.K.Albert, P.C.Van Der Vliet, H.T.Timmers, R.Boelens. The Structure of the C4C4 Ring Finger of Human NOT4 Reveals Features Distinct From Those of C3HC4 Ring Fingers J.Biol.Chem. V. 276 10185 2001.
ISSN: ISSN 0021-9258
PubMed: 11087754
DOI: 10.1074/JBC.M009298200
Page generated: Wed Dec 16 02:47:58 2020

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