Zinc in PDB 1e08: Structural Model of the [Fe]-Hydrogenase/Cytochrome C553 Complex Combining uc(Nmr) and Soft-Docking

The structure of Structural Model of the [Fe]-Hydrogenase/Cytochrome C553 Complex Combining uc(Nmr) and Soft-Docking also contains other interesting chemical elements:

Iron

(Fe)

15 atoms

The binding sites of Zinc atom in the Structural Model of the [Fe]-Hydrogenase/Cytochrome C553 Complex Combining uc(Nmr) and Soft-Docking (pdb code 1e08). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structural Model of the [Fe]-Hydrogenase/Cytochrome C553 Complex Combining uc(Nmr) and Soft-Docking, PDB code: 1e08:

Zinc binding site 1 out of 1 in the Structural Model of the [Fe]-Hydrogenase/Cytochrome C553 Complex Combining uc(Nmr) and Soft-Docking


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structural Model of the [Fe]-Hydrogenase/Cytochrome C553 Complex Combining uc(Nmr) and Soft-Docking within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn12 b:1.0 occ:1.00 O D:HIS85 1.6 1.0 1.0 O D:HIS82 1.6 1.0 1.0 NE2 D:HIS82 1.6 1.0 1.0 CD2 D:HIS82 2.4 1.0 1.0 CE1 D:HIS82 2.6 1.0 1.0 C D:HIS85 2.8 1.0 1.0 C D:HIS82 2.8 1.0 1.0 OD1 D:ASP86 2.8 1.0 1.0 CG D:HIS82 3.1 1.0 1.0 ND1 D:HIS82 3.2 1.0 1.0 CG D:ASP86 3.2 1.0 1.0 O D:LYS83 3.3 1.0 1.0 CA D:HIS82 3.5 1.0 1.0 OD2 D:ASP86 3.6 1.0 1.0 N D:ASP86 3.7 1.0 1.0 CA D:HIS85 3.8 1.0 1.0 CB D:HIS82 3.9 1.0 1.0 N D:LYS83 3.9 1.0 1.0 CB D:HIS85 4.0 1.0 1.0 C D:LYS83 4.0 1.0 1.0 CA D:ASP86 4.0 1.0 1.0 HD1 D:HIS82 4.1 0.0 1.0 CB D:ASP86 4.1 1.0 1.0 CA D:LYS83 4.3 1.0 1.0 N D:HIS85 4.3 1.0 1.0 H D:HIS85 4.4 0.0 1.0 CG D:HIS85 4.5 1.0 1.0 O D:HIS89 4.5 1.0 1.0 H D:ASP86 4.6 0.0 1.0 H D:LYS83 4.8 0.0 1.0 CD2 D:HIS85 4.9 1.0 1.0 N D:SER84 4.9 1.0 1.0 N D:HIS82 4.9 1.0 1.0 C D:SER84 5.0 1.0 1.0

X.Morelli, M.Czjzek, C.E.Hatchikian, O.Bornet, J.C.Fontecilla-Camps, N.P.Palma, J.J.Moura, F.Guerlesquin. Structural Model of the Fe-Hydrogenase/Cytochrome C553 Complex Combining Transverse Relaxation-Optimized Spectroscopy Experiments and Soft Docking Calculations. J.Biol.Chem. V. 275 23204 2000.
ISSN: ISSN 0021-9258
PubMed: 10748163
DOI: 10.1074/JBC.M909835199