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Zinc in PDB 1dsq: Structure of the Mmtv Nucleocapsid Protein (Zinc Finger 1)

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of the Mmtv Nucleocapsid Protein (Zinc Finger 1) (pdb code 1dsq). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of the Mmtv Nucleocapsid Protein (Zinc Finger 1), PDB code: 1dsq:

Zinc binding site 1 out of 1 in 1dsq

Go back to Zinc Binding Sites List in 1dsq
Zinc binding site 1 out of 1 in the Structure of the Mmtv Nucleocapsid Protein (Zinc Finger 1)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the Mmtv Nucleocapsid Protein (Zinc Finger 1) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn144

b:0.0
occ:1.00
NE2 A:HIS39 2.1 0.0 1.0
SG A:CYS44 2.3 0.0 1.0
SG A:CYS34 2.4 0.0 1.0
SG A:CYS31 2.4 0.0 1.0
CE1 A:HIS39 3.0 0.0 1.0
CD2 A:HIS39 3.1 0.0 1.0
HB2 A:CYS44 3.1 0.0 1.0
HB3 A:CYS34 3.3 0.0 1.0
HE1 A:HIS39 3.3 0.0 1.0
CB A:CYS44 3.3 0.0 1.0
CB A:CYS31 3.3 0.0 1.0
HD2 A:HIS39 3.3 0.0 1.0
H A:CYS34 3.4 0.0 1.0
HB2 A:CYS31 3.4 0.0 1.0
HB3 A:CYS31 3.4 0.0 1.0
CB A:CYS34 3.4 0.0 1.0
HB3 A:SER33 3.8 0.0 1.0
HB3 A:CYS44 3.8 0.0 1.0
N A:CYS34 4.0 0.0 1.0
ND1 A:HIS39 4.2 0.0 1.0
CG A:HIS39 4.2 0.0 1.0
HB2 A:CYS34 4.2 0.0 1.0
CA A:CYS34 4.3 0.0 1.0
HB2 A:SER33 4.3 0.0 1.0
HB2 A:LYS36 4.4 0.0 1.0
H A:LYS36 4.4 0.0 1.0
H A:GLY35 4.5 0.0 1.0
H A:SER33 4.5 0.0 1.0
HA A:CYS44 4.5 0.0 1.0
HZ2 A:LYS45 4.5 0.0 1.0
CB A:SER33 4.6 0.0 1.0
CA A:CYS44 4.6 0.0 1.0
CA A:CYS31 4.7 0.0 1.0
C A:SER33 4.9 0.0 1.0
HA A:CYS31 5.0 0.0 1.0
HA A:LYS41 5.0 0.0 1.0

Reference:

D.J.Klein, P.E.Johnson, E.S.Zollars, R.N.De Guzman, M.F.Summers. The uc(Nmr) Structure of the Nucleocapsid Protein From the Mouse Mammary Tumor Virus Reveals Unusual Folding of the C-Terminal Zinc Knuckle. Biochemistry V. 39 1604 2000.
ISSN: ISSN 0006-2960
PubMed: 10677209
DOI: 10.1021/BI9922493
Page generated: Mon Jan 25 16:09:07 2021

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