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Zinc in PDB 1dmt: Structure of Human Neutral Endopeptidase Complexed with Phosphoramidon

Enzymatic activity of Structure of Human Neutral Endopeptidase Complexed with Phosphoramidon

All present enzymatic activity of Structure of Human Neutral Endopeptidase Complexed with Phosphoramidon:
3.4.24.11;

Protein crystallography data

The structure of Structure of Human Neutral Endopeptidase Complexed with Phosphoramidon, PDB code: 1dmt was solved by C.Oefner, A.D'arcy, M.Hennig, F.K.Winkler, G.E.Dale, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.10
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 107.580, 107.580, 112.840, 90.00, 90.00, 120.00
R / Rfree (%) 19.5 / 24.2

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of Human Neutral Endopeptidase Complexed with Phosphoramidon (pdb code 1dmt). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of Human Neutral Endopeptidase Complexed with Phosphoramidon, PDB code: 1dmt:

Zinc binding site 1 out of 1 in 1dmt

Go back to Zinc Binding Sites List in 1dmt
Zinc binding site 1 out of 1 in the Structure of Human Neutral Endopeptidase Complexed with Phosphoramidon


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Human Neutral Endopeptidase Complexed with Phosphoramidon within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn755

b:18.4
occ:1.00
O1P A:RDF750 1.9 20.9 1.0
OE1 A:GLU646 2.0 16.8 1.0
NE2 A:HIS587 2.0 21.6 1.0
NE2 A:HIS583 2.0 16.1 1.0
CD A:GLU646 2.7 13.3 1.0
OE2 A:GLU646 2.8 17.6 1.0
CE1 A:HIS587 2.9 17.6 1.0
P A:RDF750 2.9 16.8 1.0
CD2 A:HIS583 3.0 10.5 1.0
CE1 A:HIS583 3.0 15.7 1.0
CD2 A:HIS587 3.1 19.9 1.0
O2P A:RDF750 3.1 16.7 1.0
NE2 A:HIS711 3.9 18.7 1.0
N A:RDF750 4.0 15.6 1.0
CA A:RDF750 4.0 15.7 1.0
CD2 A:HIS711 4.1 11.9 1.0
ND1 A:HIS587 4.1 20.6 1.0
ND1 A:HIS583 4.1 13.7 1.0
CG A:HIS583 4.1 11.2 1.0
CG A:HIS587 4.2 20.0 1.0
CG A:GLU646 4.2 14.9 1.0
O1 A:RDF750 4.2 18.7 1.0
C A:RDF750 4.3 15.8 1.0
O A:RDF750 4.4 17.1 1.0
CB A:ALA649 4.7 15.6 1.0
CB A:GLU646 4.7 13.5 1.0
CA A:GLU646 4.7 17.2 1.0
O5 A:RDF750 4.9 21.9 1.0
OE2 A:GLU584 4.9 19.4 1.0
NH2 A:ARG717 4.9 12.3 1.0
OE1 A:GLU584 5.0 15.4 1.0
C1 A:RDF750 5.0 20.0 1.0

Reference:

C.Oefner, A.D'arcy, M.Hennig, F.K.Winkler, G.E.Dale. Structure of Human Neutral Endopeptidase (Neprilysin) Complexed with Phosphoramidon. J.Mol.Biol. V. 296 341 2000.
ISSN: ISSN 0022-2836
PubMed: 10669592
DOI: 10.1006/JMBI.1999.3492
Page generated: Mon Jan 25 16:08:44 2021

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