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Zinc in PDB 1def: Peptide Deformylase Catalytic Core (Residues 1-147), uc(Nmr), 9 Structures

Enzymatic activity of Peptide Deformylase Catalytic Core (Residues 1-147), uc(Nmr), 9 Structures

All present enzymatic activity of Peptide Deformylase Catalytic Core (Residues 1-147), uc(Nmr), 9 Structures:
3.5.1.31;

Zinc Binding Sites:

The binding sites of Zinc atom in the Peptide Deformylase Catalytic Core (Residues 1-147), uc(Nmr), 9 Structures (pdb code 1def). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Peptide Deformylase Catalytic Core (Residues 1-147), uc(Nmr), 9 Structures, PDB code: 1def:

Zinc binding site 1 out of 1 in 1def

Go back to Zinc Binding Sites List in 1def
Zinc binding site 1 out of 1 in the Peptide Deformylase Catalytic Core (Residues 1-147), uc(Nmr), 9 Structures


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Peptide Deformylase Catalytic Core (Residues 1-147), uc(Nmr), 9 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn148

b:0.0
occ:1.00
NE2 A:HIS136 2.0 0.0 1.0
NE2 A:HIS132 2.0 0.0 1.0
HG3 A:GLU88 2.1 0.0 1.0
HB3 A:GLU88 2.1 0.0 1.0
SG A:CYS90 2.3 0.0 1.0
HE1 A:HIS136 2.4 0.0 1.0
CE1 A:HIS136 2.5 0.0 1.0
HA3 A:GLY45 2.5 0.0 1.0
CB A:GLU88 2.6 0.0 1.0
CG A:GLU88 2.7 0.0 1.0
HB2 A:GLU88 2.8 0.0 1.0
CE1 A:HIS132 2.9 0.0 1.0
CD2 A:HIS132 3.0 0.0 1.0
OE1 A:GLU88 3.1 0.0 1.0
HE1 A:HIS132 3.1 0.0 1.0
HB2 A:CYS90 3.1 0.0 1.0
CD2 A:HIS136 3.2 0.0 1.0
CD A:GLU88 3.3 0.0 1.0
HG13 A:ILE86 3.4 0.0 1.0
HD2 A:HIS132 3.4 0.0 1.0
CB A:CYS90 3.4 0.0 1.0
CA A:GLY45 3.5 0.0 1.0
H A:GLY89 3.6 0.0 1.0
H A:CYS90 3.6 0.0 1.0
HG2 A:GLU88 3.6 0.0 1.0
HD12 A:ILE86 3.7 0.0 1.0
ND1 A:HIS136 3.7 0.0 1.0
HA2 A:GLY45 3.7 0.0 1.0
HD2 A:HIS136 3.8 0.0 1.0
C A:GLY45 3.9 0.0 1.0
O A:ILE44 4.0 0.0 1.0
CG A:HIS136 4.1 0.0 1.0
HG12 A:ILE86 4.1 0.0 1.0
ND1 A:HIS132 4.1 0.0 1.0
HB3 A:CYS90 4.1 0.0 1.0
CA A:GLU88 4.1 0.0 1.0
CG1 A:ILE86 4.1 0.0 1.0
O A:GLY45 4.2 0.0 1.0
CG A:HIS132 4.2 0.0 1.0
OE1 A:GLU133 4.3 0.0 1.0
CD1 A:ILE86 4.4 0.0 1.0
N A:CYS90 4.4 0.0 1.0
HA A:GLU88 4.4 0.0 1.0
N A:GLY89 4.4 0.0 1.0
OE2 A:GLU88 4.5 0.0 1.0
O A:LEU46 4.5 0.0 1.0
HD1 A:HIS136 4.5 0.0 1.0
CA A:CYS90 4.5 0.0 1.0
HA A:CYS90 4.6 0.0 1.0
N A:GLY45 4.6 0.0 1.0
HA A:GLU133 4.6 0.0 1.0
N A:LEU46 4.6 0.0 1.0
C A:ILE44 4.7 0.0 1.0
HD13 A:ILE86 4.7 0.0 1.0
C A:GLU88 4.8 0.0 1.0
H A:LEU46 4.8 0.0 1.0
HD1 A:HIS132 4.9 0.0 1.0

Reference:

T.Meinnel, S.Blanquet, F.Dardel. A New Subclass of the Zinc Metalloproteases Superfamily Revealed By the Solution Structure of Peptide Deformylase. J.Mol.Biol. V. 262 375 1996.
ISSN: ISSN 0022-2836
PubMed: 8845003
DOI: 10.1006/JMBI.1996.0521
Page generated: Mon Jan 25 16:08:41 2021

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