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Zinc in PDB 1bzo: Three-Dimensional Structure of Prokaryotic Cu,Zn Superoxide Dismutase From P.Leiognathi, Solved By X-Ray Crystallography.

Enzymatic activity of Three-Dimensional Structure of Prokaryotic Cu,Zn Superoxide Dismutase From P.Leiognathi, Solved By X-Ray Crystallography.

All present enzymatic activity of Three-Dimensional Structure of Prokaryotic Cu,Zn Superoxide Dismutase From P.Leiognathi, Solved By X-Ray Crystallography.:
1.15.1.1;

Protein crystallography data

The structure of Three-Dimensional Structure of Prokaryotic Cu,Zn Superoxide Dismutase From P.Leiognathi, Solved By X-Ray Crystallography., PDB code: 1bzo was solved by D.Bordo, D.Matak, K.Djinovic-Carugo, C.Rosano, A.Pesce, M.Bolognesi, M.E.Stroppolo, M.Falconi, A.Battistoni, A.Desideri, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.70 / 2.10
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 86.890, 86.890, 99.010, 90.00, 90.00, 120.00
R / Rfree (%) 19 / 26

Other elements in 1bzo:

The structure of Three-Dimensional Structure of Prokaryotic Cu,Zn Superoxide Dismutase From P.Leiognathi, Solved By X-Ray Crystallography. also contains other interesting chemical elements:

Copper (Cu) 1 atom
Uranium (U) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Three-Dimensional Structure of Prokaryotic Cu,Zn Superoxide Dismutase From P.Leiognathi, Solved By X-Ray Crystallography. (pdb code 1bzo). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Three-Dimensional Structure of Prokaryotic Cu,Zn Superoxide Dismutase From P.Leiognathi, Solved By X-Ray Crystallography., PDB code: 1bzo:

Zinc binding site 1 out of 1 in 1bzo

Go back to Zinc Binding Sites List in 1bzo
Zinc binding site 1 out of 1 in the Three-Dimensional Structure of Prokaryotic Cu,Zn Superoxide Dismutase From P.Leiognathi, Solved By X-Ray Crystallography.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Three-Dimensional Structure of Prokaryotic Cu,Zn Superoxide Dismutase From P.Leiognathi, Solved By X-Ray Crystallography. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn151

b:19.9
occ:1.00
ND1 A:HIS69 1.9 8.7 1.0
ND1 A:HIS61 2.0 25.4 1.0
ND1 A:HIS78 2.0 18.5 1.0
OD1 A:ASP81 2.1 20.1 1.0
CE1 A:HIS69 2.7 11.1 1.0
CG A:ASP81 2.8 15.6 1.0
CE1 A:HIS61 2.9 24.0 1.0
CE1 A:HIS78 2.9 16.5 1.0
OD2 A:ASP81 3.0 10.1 1.0
CG A:HIS61 3.1 24.6 1.0
CG A:HIS78 3.1 9.5 1.0
CG A:HIS69 3.1 11.0 1.0
CB A:HIS78 3.5 8.6 1.0
CB A:HIS61 3.5 22.5 1.0
CB A:HIS69 3.6 15.2 1.0
CA A:HIS69 3.8 22.3 1.0
NE2 A:HIS69 4.0 13.0 1.0
NE2 A:HIS78 4.1 17.2 1.0
NE2 A:HIS61 4.1 27.0 1.0
CD2 A:HIS69 4.1 15.0 1.0
CD2 A:HIS78 4.2 17.4 1.0
CD2 A:HIS61 4.2 24.5 1.0
CB A:ASP81 4.2 13.0 1.0
CD2 A:LEU135 4.3 25.8 1.0
N A:GLY70 4.5 16.1 1.0
O A:LYS68A 4.5 21.7 1.0
CA A:ASP81 4.7 16.0 1.0
C A:HIS69 4.7 18.8 1.0
CA A:HIS78 4.7 9.7 1.0
N A:HIS78 4.8 11.3 1.0
N A:HIS69 4.9 23.3 1.0
N A:ASP81 4.9 14.7 1.0
CD2 A:HIS44 5.0 19.3 1.0

Reference:

D.Bordo, D.Matak, K.Djinovic-Carugo, C.Rosano, A.Pesce, M.Bolognesi, M.E.Stroppolo, M.Falconi, A.Battistoni, A.Desideri. Evolutionary Constraints For Dimer Formation in Prokaryotic Cu,Zn Superoxide Dismutase. J.Mol.Biol. V. 285 283 1999.
ISSN: ISSN 0022-2836
PubMed: 9878406
DOI: 10.1006/JMBI.1998.2267
Page generated: Wed Dec 16 02:46:13 2020

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