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Zinc in PDB 1bsk: Zinc Deformylase Inhibitor Complex From E.Coli

Enzymatic activity of Zinc Deformylase Inhibitor Complex From E.Coli

All present enzymatic activity of Zinc Deformylase Inhibitor Complex From E.Coli:
3.5.1.27;

Protein crystallography data

The structure of Zinc Deformylase Inhibitor Complex From E.Coli, PDB code: 1bsk was solved by B.Hao, W.Gong, P.T.Rajagopalan, Y.Hu, D.Pei, M.K.Chan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 3.00
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 99.170, 99.170, 110.755, 90.00, 90.00, 120.00
R / Rfree (%) 16.7 / 22.1

Zinc Binding Sites:

The binding sites of Zinc atom in the Zinc Deformylase Inhibitor Complex From E.Coli (pdb code 1bsk). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Zinc Deformylase Inhibitor Complex From E.Coli, PDB code: 1bsk:

Zinc binding site 1 out of 1 in 1bsk

Go back to Zinc Binding Sites List in 1bsk
Zinc binding site 1 out of 1 in the Zinc Deformylase Inhibitor Complex From E.Coli


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Zinc Deformylase Inhibitor Complex From E.Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn169

b:25.1
occ:1.00
O3 A:MLN171 2.0 18.8 1.0
NE2 A:HIS132 2.1 19.9 1.0
NE2 A:HIS136 2.1 24.6 1.0
SG A:CYS90 2.3 24.8 1.0
CD2 A:HIS136 3.0 25.2 1.0
CD2 A:HIS132 3.0 16.2 1.0
CE1 A:HIS132 3.1 18.6 1.0
CE1 A:HIS136 3.1 24.4 1.0
O A:HOH174 3.3 36.4 1.0
P1 A:MLN171 3.3 19.0 1.0
CB A:CYS90 3.3 23.2 1.0
O4 A:MLN171 3.6 18.2 1.0
NE2 A:GLN50 3.6 28.2 1.0
CA A:CYS90 3.9 22.6 1.0
CD A:GLN50 4.1 23.7 1.0
CG A:HIS136 4.1 23.2 1.0
OE1 A:GLN50 4.2 28.1 1.0
CG A:HIS132 4.2 19.5 1.0
ND1 A:HIS136 4.2 25.6 1.0
ND1 A:HIS132 4.2 18.0 1.0
C5 A:MLN171 4.2 15.3 1.0
O2 A:MLN171 4.3 16.5 1.0
O A:HOH172 4.4 12.8 1.0
C7 A:MLN171 4.4 14.2 1.0
OE2 A:GLU133 4.5 27.3 1.0
O A:GLY89 4.6 21.6 1.0
N A:LEU91 4.7 17.6 1.0
OE1 A:GLU133 4.7 23.9 1.0
C A:CYS90 4.8 20.8 1.0
CD A:GLU133 4.9 23.4 1.0

Reference:

B.Hao, W.Gong, P.T.Rajagopalan, Y.Zhou, D.Pei, M.K.Chan. Structural Basis For the Design of Antibiotics Targeting Peptide Deformylase. Biochemistry V. 38 4712 1999.
ISSN: ISSN 0006-2960
PubMed: 10200158
DOI: 10.1021/BI982594C
Page generated: Wed Dec 16 02:45:58 2020

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