Zinc in PDB 1bor: Transcription Factor Pml, A Proto-Oncoprotein, uc(Nmr), 1 Representative Structure at pH 7.5, 30 C, in the Presence of Zinc

The binding sites of Zinc atom in the Transcription Factor Pml, A Proto-Oncoprotein, uc(Nmr), 1 Representative Structure at pH 7.5, 30 C, in the Presence of Zinc (pdb code 1bor). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Transcription Factor Pml, A Proto-Oncoprotein, uc(Nmr), 1 Representative Structure at pH 7.5, 30 C, in the Presence of Zinc, PDB code: 1bor:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Transcription Factor Pml, A Proto-Oncoprotein, uc(Nmr), 1 Representative Structure at pH 7.5, 30 C, in the Presence of Zinc


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Transcription Factor Pml, A Proto-Oncoprotein, uc(Nmr), 1 Representative Structure at pH 7.5, 30 C, in the Presence of Zinc within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn57 b:0.0 occ:1.00 SG A:CYS29 2.3 0.0 1.0 SG A:CYS12 2.3 0.0 1.0 SG A:CYS9 2.3 0.0 1.0 SG A:CYS32 2.3 0.0 1.0 CB A:CYS29 3.1 0.0 1.0 N A:CYS12 3.3 0.0 1.0 CB A:CYS32 3.5 0.0 1.0 CB A:CYS12 3.5 0.0 1.0 CB A:CYS9 3.7 0.0 1.0 CA A:CYS12 3.8 0.0 1.0 O A:CYS12 3.9 0.0 1.0 N A:GLN11 4.0 0.0 1.0 C A:CYS12 4.2 0.0 1.0 N A:GLN10 4.3 0.0 1.0 O A:CYS29 4.3 0.0 1.0 C A:GLN11 4.3 0.0 1.0 CA A:CYS29 4.4 0.0 1.0 N A:CYS32 4.4 0.0 1.0 CA A:CYS32 4.5 0.0 1.0 CA A:GLN11 4.6 0.0 1.0 CA A:CYS9 4.7 0.0 1.0 CB A:GLN11 4.7 0.0 1.0 C A:CYS29 4.8 0.0 1.0 C A:CYS9 4.8 0.0 1.0 C A:CYS32 4.8 0.0 1.0 CB A:GLN10 4.9 0.0 1.0 N A:CYS29 4.9 0.0 1.0 C A:GLN10 4.9 0.0 1.0 CA A:GLN10 5.0 0.0 1.0

Zinc binding site 2 out of 2 in the Transcription Factor Pml, A Proto-Oncoprotein, uc(Nmr), 1 Representative Structure at pH 7.5, 30 C, in the Presence of Zinc


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Transcription Factor Pml, A Proto-Oncoprotein, uc(Nmr), 1 Representative Structure at pH 7.5, 30 C, in the Presence of Zinc within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn58 b:0.0 occ:1.00 ND1 A:HIS26 1.9 0.0 1.0 SG A:CYS24 2.3 0.0 1.0 SG A:CYS40 2.3 0.0 1.0 SG A:CYS43 2.3 0.0 1.0 O A:CYS24 2.7 0.0 1.0 CE1 A:HIS26 2.7 0.0 1.0 CB A:CYS24 3.1 0.0 1.0 CB A:CYS40 3.1 0.0 1.0 CG A:HIS26 3.1 0.0 1.0 CB A:CYS43 3.4 0.0 1.0 NZ A:LYS20 3.5 0.0 1.0 C A:CYS24 3.6 0.0 1.0 CB A:HIS26 3.7 0.0 1.0 NE2 A:HIS26 3.9 0.0 1.0 CE A:MET38 3.9 0.0 1.0 CE A:LYS20 4.0 0.0 1.0 CA A:CYS24 4.0 0.0 1.0 CD2 A:HIS26 4.1 0.0 1.0 CA A:CYS40 4.4 0.0 1.0 O A:LEU25 4.5 0.0 1.0 CA A:HIS26 4.6 0.0 1.0 CD A:PRO41 4.6 0.0 1.0 N A:HIS26 4.6 0.0 1.0 C A:LEU25 4.6 0.0 1.0 CA A:CYS43 4.8 0.0 1.0 N A:LEU25 4.8 0.0 1.0 CD1 A:LEU21 5.0 0.0 1.0 O A:GLN39 5.0 0.0 1.0

K.L.Borden, M.N.Boddy, J.Lally, N.J.O'reilly, S.Martin, K.Howe, E.Solomon, P.S.Freemont. The Solution Structure of the Ring Finger Domain From the Acute Promyelocytic Leukaemia Proto-Oncoprotein Pml. Embo J. V. 14 1532 1995.
ISSN: ISSN 0261-4189
PubMed: 7729428