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Zinc in PDB 1bj6: 1H uc(Nmr) of (12-53) NCP7/D(Acgcc) Complex, 10 Structures

Zinc Binding Sites:

The binding sites of Zinc atom in the 1H uc(Nmr) of (12-53) NCP7/D(Acgcc) Complex, 10 Structures (pdb code 1bj6). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the 1H uc(Nmr) of (12-53) NCP7/D(Acgcc) Complex, 10 Structures, PDB code: 1bj6:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 1bj6

Go back to Zinc Binding Sites List in 1bj6
Zinc binding site 1 out of 2 in the 1H uc(Nmr) of (12-53) NCP7/D(Acgcc) Complex, 10 Structures


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of 1H uc(Nmr) of (12-53) NCP7/D(Acgcc) Complex, 10 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn54

b:0.0
occ:1.00
NE2 A:HIS23 2.0 0.0 1.0
SG A:CYS28 2.2 0.0 1.0
SG A:CYS18 2.3 0.0 1.0
SG A:CYS15 2.3 0.0 1.0
HB2 A:CYS28 2.5 0.0 1.0
H A:CYS18 2.8 0.0 1.0
CB A:CYS28 2.9 0.0 1.0
HB3 A:CYS15 3.0 0.0 1.0
HB2 A:CYS15 3.0 0.0 1.0
CD2 A:HIS23 3.1 0.0 1.0
CB A:CYS15 3.1 0.0 1.0
CE1 A:HIS23 3.1 0.0 1.0
HD2 A:HIS23 3.2 0.0 1.0
HB3 A:CYS18 3.3 0.0 1.0
CB A:CYS18 3.3 0.0 1.0
H A:GLY19 3.3 0.0 1.0
HE1 A:HIS23 3.4 0.0 1.0
H A:LYS20 3.5 0.0 1.0
HA A:CYS28 3.5 0.0 1.0
HB3 A:ASN17 3.5 0.0 1.0
N A:CYS18 3.6 0.0 1.0
HB2 A:LYS20 3.7 0.0 1.0
HB3 A:CYS28 3.8 0.0 1.0
CA A:CYS28 3.8 4.0 1.0
CA A:CYS18 3.9 4.0 1.0
N A:GLY19 4.0 0.0 1.0
HB2 A:CYS18 4.2 0.0 1.0
ND1 A:HIS23 4.3 0.0 1.0
CG A:HIS23 4.3 0.0 1.0
HA A:ALA25 4.3 0.0 1.0
H A:ARG29 4.4 0.0 1.0
C A:CYS18 4.4 0.0 1.0
N A:LYS20 4.5 0.0 1.0
HG3 A:LYS20 4.5 0.0 1.0
CB A:ASN17 4.5 0.0 1.0
H A:ASN17 4.5 0.0 1.0
HD21 A:ASN17 4.6 0.0 1.0
HG2 A:LYS20 4.6 0.0 1.0
CA A:CYS15 4.6 4.0 1.0
HB2 A:ALA30 4.6 0.0 1.0
CB A:LYS20 4.6 0.0 1.0
N A:CYS28 4.8 0.0 1.0
C A:ASN17 4.8 0.0 1.0
H A:ALA30 4.8 0.0 1.0
CG A:LYS20 4.8 0.0 1.0
C A:CYS28 4.9 0.0 1.0
H A:CYS28 4.9 0.0 1.0
HA A:CYS18 4.9 0.0 1.0
N A:ARG29 5.0 0.0 1.0
HA A:CYS15 5.0 0.0 1.0
ND2 A:ASN17 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 1bj6

Go back to Zinc Binding Sites List in 1bj6
Zinc binding site 2 out of 2 in the 1H uc(Nmr) of (12-53) NCP7/D(Acgcc) Complex, 10 Structures


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of 1H uc(Nmr) of (12-53) NCP7/D(Acgcc) Complex, 10 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn55

b:0.0
occ:1.00
NE2 A:HIS44 2.0 0.0 1.0
SG A:CYS39 2.3 0.0 1.0
SG A:CYS49 2.3 0.0 1.0
SG A:CYS36 2.3 0.0 1.0
HB2 A:CYS49 2.6 0.0 1.0
H A:CYS39 2.9 0.0 1.0
CB A:CYS49 3.0 0.0 1.0
HB3 A:CYS36 3.0 0.0 1.0
CD2 A:HIS44 3.1 0.0 1.0
CE1 A:HIS44 3.1 0.0 1.0
CB A:CYS36 3.1 0.0 1.0
HG2 A:GLU51 3.1 0.0 1.0
HB2 A:CYS36 3.1 0.0 1.0
HD2 A:HIS44 3.2 0.0 1.0
H A:GLY40 3.4 0.0 1.0
HE1 A:HIS44 3.4 0.0 1.0
CB A:CYS39 3.4 0.0 1.0
HB3 A:CYS39 3.4 0.0 1.0
H A:LYS41 3.4 0.0 1.0
HA A:CYS49 3.7 0.0 1.0
HB2 A:LYS38 3.7 0.0 1.0
HB3 A:CYS49 3.8 0.0 1.0
N A:CYS39 3.8 0.0 1.0
HB2 A:LYS41 3.9 0.0 1.0
CA A:CYS49 4.0 4.0 1.0
HG3 A:GLU51 4.0 0.0 1.0
CG A:GLU51 4.0 0.0 1.0
CA A:CYS39 4.1 4.0 1.0
HA A:MET46 4.1 0.0 1.0
N A:GLY40 4.2 0.0 1.0
CG A:HIS44 4.3 0.0 1.0
OE2 A:GLU51 4.3 0.0 1.0
ND1 A:HIS44 4.3 0.0 1.0
HB2 A:CYS39 4.3 0.0 1.0
N A:LYS41 4.4 0.0 1.0
H A:THR50 4.5 0.0 1.0
CD A:GLU51 4.5 0.0 1.0
C A:CYS39 4.6 0.0 1.0
H A:GLU51 4.6 0.0 1.0
CA A:CYS36 4.6 4.0 1.0
CB A:LYS38 4.7 0.0 1.0
H A:LYS38 4.7 0.0 1.0
O A:LYS41 4.7 0.0 1.0
HB3 A:LYS38 4.8 0.0 1.0
CB A:LYS41 4.8 0.0 1.0
HB3 A:LYS41 4.9 0.0 1.0
C A:CYS49 4.9 0.0 1.0
H A:CYS49 4.9 0.0 1.0
C A:LYS38 4.9 0.0 1.0
H A:TRP37 5.0 0.0 1.0
N A:CYS49 5.0 0.0 1.0

Reference:

N.Morellet, H.Demene, V.Teilleux, T.Huynh-Dinh, H.De Rocquigny, M.C.Fournie-Zaluski, B.P.Roques. Structure of the Complex Between the Hiv-1 Nucleocapsid Protein NCP7 and the Single-Stranded Pentanucleotide D(Acgcc). J.Mol.Biol. V. 283 419 1998.
ISSN: ISSN 0022-2836
PubMed: 9769215
DOI: 10.1006/JMBI.1998.2098
Page generated: Wed Dec 16 02:45:52 2020

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