Zinc in PDB 1bbo: High-Resolution Solution Structure of the Double CYS2*HIS2 Zinc Finger From the Human Enhancer Binding Protein Mbp-1
Zinc Binding Sites:
The binding sites of Zinc atom in the High-Resolution Solution Structure of the Double CYS2*HIS2 Zinc Finger From the Human Enhancer Binding Protein Mbp-1
(pdb code 1bbo). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the
High-Resolution Solution Structure of the Double CYS2*HIS2 Zinc Finger From the Human Enhancer Binding Protein Mbp-1, PDB code: 1bbo:
Jump to Zinc binding site number:
1;
2;
Zinc binding site 1 out
of 2 in 1bbo
Go back to
Zinc Binding Sites List in 1bbo
Zinc binding site 1 out
of 2 in the High-Resolution Solution Structure of the Double CYS2*HIS2 Zinc Finger From the Human Enhancer Binding Protein Mbp-1
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of High-Resolution Solution Structure of the Double CYS2*HIS2 Zinc Finger From the Human Enhancer Binding Protein Mbp-1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn60
b:0.0
occ:1.00
|
NE2
|
A:HIS24
|
2.0
|
0.0
|
1.0
|
NE2
|
A:HIS20
|
2.0
|
0.0
|
1.0
|
SG
|
A:CYS4
|
2.3
|
0.0
|
1.0
|
SG
|
A:CYS7
|
2.3
|
0.0
|
1.0
|
H
|
A:CYS7
|
2.8
|
0.0
|
1.0
|
CE1
|
A:HIS24
|
3.0
|
0.0
|
1.0
|
CD2
|
A:HIS24
|
3.0
|
0.0
|
1.0
|
CE1
|
A:HIS20
|
3.0
|
0.0
|
1.0
|
CD2
|
A:HIS20
|
3.0
|
0.0
|
1.0
|
HB3
|
A:GLU6
|
3.1
|
0.0
|
1.0
|
HB2
|
A:CYS7
|
3.2
|
0.0
|
1.0
|
HE1
|
A:HIS24
|
3.2
|
0.0
|
1.0
|
HE1
|
A:HIS20
|
3.2
|
0.0
|
1.0
|
HD2
|
A:HIS24
|
3.2
|
0.0
|
1.0
|
HD2
|
A:HIS20
|
3.3
|
0.0
|
1.0
|
HB2
|
A:CYS4
|
3.3
|
0.0
|
1.0
|
CB
|
A:CYS7
|
3.3
|
0.0
|
1.0
|
CB
|
A:CYS4
|
3.3
|
0.0
|
1.0
|
HB3
|
A:CYS4
|
3.5
|
0.0
|
1.0
|
N
|
A:CYS7
|
3.6
|
0.0
|
1.0
|
ND1
|
A:HIS24
|
4.1
|
0.0
|
1.0
|
ND1
|
A:HIS20
|
4.1
|
0.0
|
1.0
|
CA
|
A:CYS7
|
4.1
|
0.0
|
1.0
|
CG
|
A:HIS24
|
4.1
|
0.0
|
1.0
|
CG
|
A:HIS20
|
4.1
|
0.0
|
1.0
|
HB3
|
A:CYS7
|
4.2
|
0.0
|
1.0
|
H
|
A:GLY8
|
4.2
|
0.0
|
1.0
|
CB
|
A:GLU6
|
4.2
|
0.0
|
1.0
|
HB
|
A:ILE9
|
4.3
|
0.0
|
1.0
|
H
|
A:GLU6
|
4.4
|
0.0
|
1.0
|
H
|
A:ILE9
|
4.5
|
0.0
|
1.0
|
HB2
|
A:GLU6
|
4.5
|
0.0
|
1.0
|
HG22
|
A:ILE9
|
4.6
|
0.0
|
1.0
|
HA
|
A:ILE21
|
4.7
|
0.0
|
1.0
|
C
|
A:GLU6
|
4.7
|
0.0
|
1.0
|
CA
|
A:CYS4
|
4.8
|
0.0
|
1.0
|
HA
|
A:CYS7
|
4.9
|
0.0
|
1.0
|
CA
|
A:GLU6
|
4.9
|
0.0
|
1.0
|
HG2
|
A:GLU6
|
4.9
|
0.0
|
1.0
|
N
|
A:GLY8
|
4.9
|
0.0
|
1.0
|
HD1
|
A:HIS24
|
4.9
|
0.0
|
1.0
|
HD1
|
A:HIS20
|
5.0
|
0.0
|
1.0
|
HG21
|
A:ILE9
|
5.0
|
0.0
|
1.0
|
N
|
A:GLU6
|
5.0
|
0.0
|
1.0
|
|
Zinc binding site 2 out
of 2 in 1bbo
Go back to
Zinc Binding Sites List in 1bbo
Zinc binding site 2 out
of 2 in the High-Resolution Solution Structure of the Double CYS2*HIS2 Zinc Finger From the Human Enhancer Binding Protein Mbp-1
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of High-Resolution Solution Structure of the Double CYS2*HIS2 Zinc Finger From the Human Enhancer Binding Protein Mbp-1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn61
b:0.0
occ:1.00
|
NE2
|
A:HIS54
|
2.0
|
0.0
|
1.0
|
NE2
|
A:HIS48
|
2.0
|
0.0
|
1.0
|
SG
|
A:CYS35
|
2.3
|
0.0
|
1.0
|
SG
|
A:CYS32
|
2.3
|
0.0
|
1.0
|
H
|
A:CYS35
|
2.7
|
0.0
|
1.0
|
CE1
|
A:HIS54
|
3.0
|
0.0
|
1.0
|
CE1
|
A:HIS48
|
3.0
|
0.0
|
1.0
|
CD2
|
A:HIS48
|
3.0
|
0.0
|
1.0
|
CD2
|
A:HIS54
|
3.0
|
0.0
|
1.0
|
HB2
|
A:TYR34
|
3.0
|
0.0
|
1.0
|
HE1
|
A:HIS54
|
3.2
|
0.0
|
1.0
|
HB2
|
A:CYS35
|
3.2
|
0.0
|
1.0
|
HE1
|
A:HIS48
|
3.2
|
0.0
|
1.0
|
HD2
|
A:HIS48
|
3.3
|
0.0
|
1.0
|
HD2
|
A:HIS54
|
3.3
|
0.0
|
1.0
|
HB2
|
A:CYS32
|
3.3
|
0.0
|
1.0
|
CB
|
A:CYS35
|
3.3
|
0.0
|
1.0
|
CB
|
A:CYS32
|
3.4
|
0.0
|
1.0
|
N
|
A:CYS35
|
3.6
|
0.0
|
1.0
|
HB3
|
A:CYS32
|
3.6
|
0.0
|
1.0
|
ND1
|
A:HIS54
|
4.1
|
0.0
|
1.0
|
ND1
|
A:HIS48
|
4.1
|
0.0
|
1.0
|
CB
|
A:TYR34
|
4.1
|
0.0
|
1.0
|
CA
|
A:CYS35
|
4.1
|
0.0
|
1.0
|
HD1
|
A:TYR34
|
4.1
|
0.0
|
1.0
|
CG
|
A:HIS48
|
4.2
|
0.0
|
1.0
|
CG
|
A:HIS54
|
4.2
|
0.0
|
1.0
|
H
|
A:TYR34
|
4.2
|
0.0
|
1.0
|
HB3
|
A:CYS35
|
4.2
|
0.0
|
1.0
|
HB3
|
A:TYR34
|
4.6
|
0.0
|
1.0
|
HE3
|
A:MET49
|
4.6
|
0.0
|
1.0
|
C
|
A:TYR34
|
4.6
|
0.0
|
1.0
|
HB3
|
A:ALA53
|
4.7
|
0.0
|
1.0
|
HA
|
A:CYS35
|
4.8
|
0.0
|
1.0
|
N
|
A:TYR34
|
4.8
|
0.0
|
1.0
|
CA
|
A:TYR34
|
4.8
|
0.0
|
1.0
|
CD1
|
A:TYR34
|
4.8
|
0.0
|
1.0
|
CA
|
A:CYS32
|
4.8
|
0.0
|
1.0
|
CG
|
A:TYR34
|
4.9
|
0.0
|
1.0
|
HD1
|
A:HIS54
|
4.9
|
0.0
|
1.0
|
HD1
|
A:HIS48
|
5.0
|
0.0
|
1.0
|
|
Reference:
J.G.Omichinski,
G.M.Clore,
M.Robien,
K.Sakaguchi,
E.Appella,
A.M.Gronenborn.
High-Resolution Solution Structure of the Double CYS2HIS2 Zinc Finger From the Human Enhancer Binding Protein Mbp-1. Biochemistry V. 31 3907 1992.
ISSN: ISSN 0006-2960
PubMed: 1567844
DOI: 10.1021/BI00131A004
Page generated: Sat Oct 12 22:29:24 2024
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