Zinc in PDB 1b8t: Solution Structure of the Chicken CRP1
Zinc Binding Sites:
The binding sites of Zinc atom in the Solution Structure of the Chicken CRP1
(pdb code 1b8t). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the
Solution Structure of the Chicken CRP1, PDB code: 1b8t:
Jump to Zinc binding site number:
1;
2;
3;
4;
Zinc binding site 1 out
of 4 in 1b8t
Go back to
Zinc Binding Sites List in 1b8t
Zinc binding site 1 out
of 4 in the Solution Structure of the Chicken CRP1
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Solution Structure of the Chicken CRP1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn193
b:0.0
occ:1.00
|
ND1
|
A:HIS31
|
2.0
|
0.0
|
1.0
|
SG
|
A:CYS10
|
2.3
|
0.0
|
1.0
|
SG
|
A:CYS34
|
2.4
|
0.0
|
1.0
|
SG
|
A:CYS13
|
2.4
|
0.0
|
1.0
|
HB2
|
A:HIS31
|
2.6
|
0.0
|
1.0
|
H
|
A:HIS31
|
2.6
|
0.0
|
1.0
|
CG
|
A:HIS31
|
2.9
|
0.0
|
1.0
|
H
|
A:CYS13
|
3.0
|
0.0
|
1.0
|
HB3
|
A:CYS13
|
3.0
|
0.0
|
1.0
|
CE1
|
A:HIS31
|
3.1
|
0.0
|
1.0
|
CB
|
A:HIS31
|
3.2
|
0.0
|
1.0
|
HB2
|
A:CYS34
|
3.2
|
0.0
|
1.0
|
CB
|
A:CYS10
|
3.3
|
0.0
|
1.0
|
CB
|
A:CYS13
|
3.3
|
0.0
|
1.0
|
CB
|
A:CYS34
|
3.3
|
0.0
|
1.0
|
HB3
|
A:CYS10
|
3.3
|
0.0
|
1.0
|
HE1
|
A:HIS31
|
3.4
|
0.0
|
1.0
|
HB2
|
A:CYS10
|
3.4
|
0.0
|
1.0
|
HG12
|
A:VAL12
|
3.5
|
0.0
|
1.0
|
N
|
A:HIS31
|
3.5
|
0.0
|
1.0
|
HB3
|
A:CYS34
|
3.6
|
0.0
|
1.0
|
HB
|
A:VAL12
|
3.8
|
0.0
|
1.0
|
N
|
A:CYS13
|
3.8
|
0.0
|
1.0
|
CA
|
A:HIS31
|
4.0
|
0.0
|
1.0
|
HB3
|
A:PHE30
|
4.1
|
0.0
|
1.0
|
HB3
|
A:HIS31
|
4.1
|
0.0
|
1.0
|
CD2
|
A:HIS31
|
4.1
|
0.0
|
1.0
|
HB2
|
A:CYS13
|
4.1
|
0.0
|
1.0
|
CA
|
A:CYS13
|
4.2
|
0.0
|
1.0
|
NE2
|
A:HIS31
|
4.2
|
0.0
|
1.0
|
HA
|
A:PHE30
|
4.3
|
0.0
|
1.0
|
H
|
A:LYS15
|
4.3
|
0.0
|
1.0
|
CG1
|
A:VAL12
|
4.4
|
0.0
|
1.0
|
H
|
A:VAL12
|
4.5
|
0.0
|
1.0
|
H
|
A:GLN14
|
4.5
|
0.0
|
1.0
|
CB
|
A:VAL12
|
4.6
|
0.0
|
1.0
|
C
|
A:PHE30
|
4.6
|
0.0
|
1.0
|
HG11
|
A:VAL12
|
4.7
|
0.0
|
1.0
|
HA
|
A:HIS31
|
4.7
|
0.0
|
1.0
|
HB2
|
A:LYS15
|
4.7
|
0.0
|
1.0
|
CA
|
A:CYS34
|
4.7
|
0.0
|
1.0
|
CA
|
A:CYS10
|
4.7
|
0.0
|
1.0
|
H
|
A:CYS34
|
4.7
|
0.0
|
1.0
|
CA
|
A:PHE30
|
4.8
|
0.0
|
1.0
|
HB3
|
A:LYS15
|
4.9
|
0.0
|
1.0
|
CB
|
A:PHE30
|
4.9
|
0.0
|
1.0
|
HA
|
A:CYS34
|
4.9
|
0.0
|
1.0
|
HA
|
A:CYS13
|
4.9
|
0.0
|
1.0
|
C
|
A:VAL12
|
4.9
|
0.0
|
1.0
|
HA
|
A:CYS10
|
5.0
|
0.0
|
1.0
|
|
Zinc binding site 2 out
of 4 in 1b8t
Go back to
Zinc Binding Sites List in 1b8t
Zinc binding site 2 out
of 4 in the Solution Structure of the Chicken CRP1
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Solution Structure of the Chicken CRP1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn194
b:0.0
occ:1.00
|
SG
|
A:CYS58
|
2.3
|
0.0
|
1.0
|
SG
|
A:CYS37
|
2.3
|
0.0
|
1.0
|
SG
|
A:CYS61
|
2.4
|
0.0
|
1.0
|
SG
|
A:CYS40
|
2.4
|
0.0
|
1.0
|
H
|
A:CYS40
|
2.9
|
0.0
|
1.0
|
H
|
A:CYS58
|
3.1
|
0.0
|
1.0
|
HB2
|
A:CYS61
|
3.2
|
0.0
|
1.0
|
HB3
|
A:CYS40
|
3.2
|
0.0
|
1.0
|
CB
|
A:CYS37
|
3.3
|
0.0
|
1.0
|
HB
|
A:VAL39
|
3.3
|
0.0
|
1.0
|
HB2
|
A:CYS37
|
3.4
|
0.0
|
1.0
|
HB3
|
A:CYS58
|
3.4
|
0.0
|
1.0
|
HB3
|
A:CYS37
|
3.4
|
0.0
|
1.0
|
CB
|
A:CYS40
|
3.4
|
0.0
|
1.0
|
CB
|
A:CYS61
|
3.4
|
0.0
|
1.0
|
CB
|
A:CYS58
|
3.5
|
0.0
|
1.0
|
N
|
A:CYS40
|
3.8
|
0.0
|
1.0
|
H
|
A:CYS61
|
3.9
|
0.0
|
1.0
|
N
|
A:CYS58
|
4.0
|
0.0
|
1.0
|
HB3
|
A:CYS61
|
4.0
|
0.0
|
1.0
|
HD12
|
A:LEU44
|
4.2
|
0.0
|
1.0
|
CA
|
A:CYS40
|
4.2
|
0.0
|
1.0
|
HB2
|
A:CYS40
|
4.3
|
0.0
|
1.0
|
HB2
|
A:CYS58
|
4.3
|
0.0
|
1.0
|
CA
|
A:CYS58
|
4.3
|
0.0
|
1.0
|
CB
|
A:VAL39
|
4.4
|
0.0
|
1.0
|
H
|
A:VAL39
|
4.4
|
0.0
|
1.0
|
H
|
A:LYS42
|
4.5
|
0.0
|
1.0
|
CA
|
A:CYS61
|
4.6
|
0.0
|
1.0
|
HB3
|
A:LYS42
|
4.6
|
0.0
|
1.0
|
H
|
A:LYS41
|
4.6
|
0.0
|
1.0
|
N
|
A:CYS61
|
4.6
|
0.0
|
1.0
|
HA
|
A:TYR57
|
4.7
|
0.0
|
1.0
|
CA
|
A:CYS37
|
4.7
|
0.0
|
1.0
|
HG21
|
A:VAL39
|
4.7
|
0.0
|
1.0
|
HG13
|
A:VAL39
|
4.8
|
0.0
|
1.0
|
HA
|
A:CYS61
|
4.8
|
0.0
|
1.0
|
HG11
|
A:VAL39
|
4.8
|
0.0
|
1.0
|
O
|
A:CYS58
|
4.8
|
0.0
|
1.0
|
HB3
|
A:SER60
|
4.9
|
0.0
|
1.0
|
HD22
|
A:LEU44
|
4.9
|
0.0
|
1.0
|
C
|
A:VAL39
|
4.9
|
0.0
|
1.0
|
HA
|
A:CYS37
|
4.9
|
0.0
|
1.0
|
HA
|
A:CYS40
|
5.0
|
0.0
|
1.0
|
CG1
|
A:VAL39
|
5.0
|
0.0
|
1.0
|
C
|
A:CYS58
|
5.0
|
0.0
|
1.0
|
|
Zinc binding site 3 out
of 4 in 1b8t
Go back to
Zinc Binding Sites List in 1b8t
Zinc binding site 3 out
of 4 in the Solution Structure of the Chicken CRP1
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 3 of Solution Structure of the Chicken CRP1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn195
b:0.0
occ:1.00
|
ND1
|
A:HIS139
|
2.1
|
0.0
|
1.0
|
SG
|
A:CYS118
|
2.3
|
0.0
|
1.0
|
SG
|
A:CYS142
|
2.4
|
0.0
|
1.0
|
SG
|
A:CYS121
|
2.4
|
0.0
|
1.0
|
HB2
|
A:HIS139
|
2.6
|
0.0
|
1.0
|
H
|
A:CYS121
|
2.9
|
0.0
|
1.0
|
CG
|
A:HIS139
|
3.0
|
0.0
|
1.0
|
HB3
|
A:CYS121
|
3.1
|
0.0
|
1.0
|
HB2
|
A:CYS142
|
3.1
|
0.0
|
1.0
|
CE1
|
A:HIS139
|
3.1
|
0.0
|
1.0
|
HB3
|
A:ARG120
|
3.2
|
0.0
|
1.0
|
CB
|
A:CYS142
|
3.3
|
0.0
|
1.0
|
CB
|
A:CYS118
|
3.3
|
0.0
|
1.0
|
CB
|
A:HIS139
|
3.3
|
0.0
|
1.0
|
HB3
|
A:CYS118
|
3.3
|
0.0
|
1.0
|
CB
|
A:CYS121
|
3.3
|
0.0
|
1.0
|
H
|
A:HIS139
|
3.4
|
0.0
|
1.0
|
HE1
|
A:HIS139
|
3.4
|
0.0
|
1.0
|
HB2
|
A:CYS118
|
3.5
|
0.0
|
1.0
|
HB3
|
A:CYS142
|
3.6
|
0.0
|
1.0
|
N
|
A:CYS121
|
3.7
|
0.0
|
1.0
|
HB3
|
A:HIS139
|
4.0
|
0.0
|
1.0
|
CA
|
A:CYS121
|
4.1
|
0.0
|
1.0
|
HB2
|
A:CYS121
|
4.2
|
0.0
|
1.0
|
CD2
|
A:HIS139
|
4.2
|
0.0
|
1.0
|
N
|
A:HIS139
|
4.2
|
0.0
|
1.0
|
H
|
A:CYS142
|
4.2
|
0.0
|
1.0
|
NE2
|
A:HIS139
|
4.2
|
0.0
|
1.0
|
CB
|
A:ARG120
|
4.3
|
0.0
|
1.0
|
H
|
A:GLY122
|
4.3
|
0.0
|
1.0
|
CA
|
A:HIS139
|
4.4
|
0.0
|
1.0
|
H
|
A:ARG120
|
4.5
|
0.0
|
1.0
|
HG
|
A:SER141
|
4.5
|
0.0
|
1.0
|
CA
|
A:CYS142
|
4.6
|
0.0
|
1.0
|
HB2
|
A:ARG120
|
4.7
|
0.0
|
1.0
|
HB2
|
A:GLN123
|
4.7
|
0.0
|
1.0
|
CA
|
A:CYS118
|
4.7
|
0.0
|
1.0
|
HG2
|
A:ARG120
|
4.8
|
0.0
|
1.0
|
C
|
A:ARG120
|
4.8
|
0.0
|
1.0
|
HA
|
A:CYS121
|
4.8
|
0.0
|
1.0
|
N
|
A:CYS142
|
4.8
|
0.0
|
1.0
|
H
|
A:GLN123
|
4.9
|
0.0
|
1.0
|
HA
|
A:CYS118
|
5.0
|
0.0
|
1.0
|
|
Zinc binding site 4 out
of 4 in 1b8t
Go back to
Zinc Binding Sites List in 1b8t
Zinc binding site 4 out
of 4 in the Solution Structure of the Chicken CRP1
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 4 of Solution Structure of the Chicken CRP1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn196
b:0.0
occ:1.00
|
SG
|
A:CYS145
|
2.3
|
0.0
|
1.0
|
SG
|
A:CYS166
|
2.3
|
0.0
|
1.0
|
SG
|
A:CYS148
|
2.3
|
0.0
|
1.0
|
SG
|
A:CYS169
|
2.4
|
0.0
|
1.0
|
H
|
A:CYS166
|
2.8
|
0.0
|
1.0
|
H
|
A:CYS148
|
3.0
|
0.0
|
1.0
|
HB2
|
A:CYS169
|
3.1
|
0.0
|
1.0
|
HB3
|
A:LYS147
|
3.3
|
0.0
|
1.0
|
CB
|
A:CYS145
|
3.3
|
0.0
|
1.0
|
HB3
|
A:CYS148
|
3.3
|
0.0
|
1.0
|
HB3
|
A:CYS166
|
3.3
|
0.0
|
1.0
|
HB3
|
A:CYS145
|
3.3
|
0.0
|
1.0
|
CB
|
A:CYS169
|
3.3
|
0.0
|
1.0
|
CB
|
A:CYS148
|
3.4
|
0.0
|
1.0
|
CB
|
A:CYS166
|
3.4
|
0.0
|
1.0
|
HB2
|
A:CYS145
|
3.5
|
0.0
|
1.0
|
HB2
|
A:LYS147
|
3.5
|
0.0
|
1.0
|
N
|
A:CYS148
|
3.6
|
0.0
|
1.0
|
N
|
A:CYS166
|
3.7
|
0.0
|
1.0
|
CB
|
A:LYS147
|
3.9
|
0.0
|
1.0
|
HB3
|
A:TYR165
|
3.9
|
0.0
|
1.0
|
H
|
A:CYS169
|
4.0
|
0.0
|
1.0
|
HB3
|
A:CYS169
|
4.1
|
0.0
|
1.0
|
CA
|
A:CYS166
|
4.1
|
0.0
|
1.0
|
CA
|
A:CYS148
|
4.1
|
0.0
|
1.0
|
H
|
A:LYS147
|
4.1
|
0.0
|
1.0
|
HB2
|
A:CYS148
|
4.3
|
0.0
|
1.0
|
HB2
|
A:CYS166
|
4.3
|
0.0
|
1.0
|
C
|
A:LYS147
|
4.4
|
0.0
|
1.0
|
H
|
A:GLY149
|
4.4
|
0.0
|
1.0
|
CA
|
A:CYS169
|
4.4
|
0.0
|
1.0
|
N
|
A:CYS169
|
4.4
|
0.0
|
1.0
|
HA
|
A:TYR165
|
4.5
|
0.0
|
1.0
|
CA
|
A:LYS147
|
4.5
|
0.0
|
1.0
|
O
|
A:CYS166
|
4.6
|
0.0
|
1.0
|
HA
|
A:CYS169
|
4.6
|
0.0
|
1.0
|
HD1
|
A:TYR165
|
4.7
|
0.0
|
1.0
|
H
|
A:LYS150
|
4.7
|
0.0
|
1.0
|
CA
|
A:CYS145
|
4.7
|
0.0
|
1.0
|
N
|
A:LYS147
|
4.7
|
0.0
|
1.0
|
C
|
A:TYR165
|
4.7
|
0.0
|
1.0
|
C
|
A:CYS166
|
4.8
|
0.0
|
1.0
|
HB2
|
A:LYS150
|
4.8
|
0.0
|
1.0
|
CB
|
A:TYR165
|
4.8
|
0.0
|
1.0
|
HA
|
A:CYS148
|
4.9
|
0.0
|
1.0
|
CA
|
A:TYR165
|
4.9
|
0.0
|
1.0
|
HA
|
A:CYS166
|
5.0
|
0.0
|
1.0
|
|
Reference:
X.Yao,
G.C.Perez-Alvarado,
H.A.Louis,
P.Pomies,
C.Hatt,
M.F.Summers,
M.C.Beckerle.
Solution Structure of the Chicken Cysteine-Rich Protein, CRP1, A Double-Lim Protein Implicated in Muscle Differentiation. Biochemistry V. 38 5701 1999.
ISSN: ISSN 0006-2960
PubMed: 10231520
DOI: 10.1021/BI982036Y
Page generated: Sat Oct 12 22:26:23 2024
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