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Zinc in PDB 1anv: Adenovirus 5 Dbp/Uranyl Fluoride Soak

Protein crystallography data

The structure of Adenovirus 5 Dbp/Uranyl Fluoride Soak, PDB code: 1anv was solved by P.N.Kanellopoulos, D.Tsernoglou, P.C.Van Der Vliet, P.A.Tucker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.00 / 2.70
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 79.700, 75.600, 60.600, 90.00, 90.00, 90.00
R / Rfree (%) 20.4 / 31.4

Other elements in 1anv:

The structure of Adenovirus 5 Dbp/Uranyl Fluoride Soak also contains other interesting chemical elements:

Uranium (U) 4 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Adenovirus 5 Dbp/Uranyl Fluoride Soak (pdb code 1anv). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Adenovirus 5 Dbp/Uranyl Fluoride Soak, PDB code: 1anv:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 1anv

Go back to Zinc Binding Sites List in 1anv
Zinc binding site 1 out of 2 in the Adenovirus 5 Dbp/Uranyl Fluoride Soak


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Adenovirus 5 Dbp/Uranyl Fluoride Soak within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn530

b:22.0
occ:1.00
ND1 A:HIS286 1.8 21.1 1.0
SG A:CYS339 2.1 21.8 1.0
SG A:CYS284 2.2 16.5 1.0
SG A:CYS355 2.4 20.5 1.0
CE1 A:HIS286 2.6 19.6 1.0
CG A:HIS286 3.0 20.4 1.0
CB A:CYS355 3.1 16.9 1.0
CB A:CYS284 3.3 11.6 1.0
CB A:CYS339 3.5 17.6 1.0
CB A:HIS286 3.5 16.4 1.0
N A:HIS286 3.7 17.1 1.0
NE2 A:HIS286 3.8 21.0 1.0
N A:CYS355 3.9 18.0 1.0
CD2 A:HIS286 4.0 20.4 1.0
O A:HOH1 4.1 28.3 1.0
CA A:CYS355 4.1 16.2 1.0
CA A:CYS339 4.2 17.0 1.0
N A:LEU285 4.2 15.1 1.0
CA A:HIS286 4.2 16.4 1.0
CA A:CYS284 4.5 12.5 1.0
C A:CYS284 4.5 20.6 1.0
C A:LEU285 4.7 17.4 1.0
N A:VAL340 4.8 12.0 1.0
OG A:SER288 4.8 45.7 1.0
CA A:LEU285 4.9 13.4 1.0
C A:CYS339 4.9 21.7 1.0
C A:SER354 5.0 19.1 1.0

Zinc binding site 2 out of 2 in 1anv

Go back to Zinc Binding Sites List in 1anv
Zinc binding site 2 out of 2 in the Adenovirus 5 Dbp/Uranyl Fluoride Soak


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Adenovirus 5 Dbp/Uranyl Fluoride Soak within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn531

b:25.2
occ:1.00
SG A:CYS450 2.1 28.0 1.0
SG A:CYS398 2.2 24.3 1.0
SG A:CYS396 2.3 19.1 1.0
SG A:CYS467 2.3 29.1 1.0
CB A:CYS398 3.1 16.3 1.0
N A:CYS398 3.2 12.7 1.0
CB A:CYS467 3.3 24.8 1.0
CB A:CYS450 3.5 21.7 1.0
CB A:CYS396 3.5 15.0 1.0
N A:CYS467 3.5 28.1 1.0
CA A:CYS398 3.7 14.0 1.0
CA A:CYS450 3.9 15.0 1.0
CA A:CYS467 3.9 24.5 1.0
N A:CYS451 3.9 23.6 1.0
N A:GLU397 3.9 17.1 1.0
C A:GLU397 4.2 21.3 1.0
C A:ASN466 4.4 40.1 1.0
CA A:GLU397 4.4 21.6 1.0
CB A:GLU397 4.4 24.6 1.0
C A:CYS450 4.5 18.9 1.0
C A:CYS396 4.5 17.7 1.0
CA A:CYS396 4.6 14.6 1.0
C A:CYS467 4.7 24.5 1.0
CA A:ASN466 4.7 39.1 1.0
O A:CYS467 4.8 21.6 1.0
CB A:CYS451 4.9 21.7 1.0

Reference:

P.N.Kanellopoulos, D.Tsernoglou, P.C.Van Der Vliet, P.A.Tucker. Conformational Change of the Adenovirus Dna-Binding Protein Induced By Soaking Crystals with K3UO2F5 Solutions. Acta Crystallogr.,Sect.D V. 52 942 1996.
ISSN: ISSN 0907-4449
PubMed: 15299602
DOI: 10.1107/S0907444996005525
Page generated: Wed Dec 16 02:44:56 2020

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