Atomistry » Zinc » PDB 1adf-1axg » 1adv
Atomistry »
  Zinc »
    PDB 1adf-1axg »
      1adv »

Zinc in PDB 1adv: Early E2A Dna-Binding Protein

Protein crystallography data

The structure of Early E2A Dna-Binding Protein, PDB code: 1adv was solved by P.N.Kanellopoulos, D.Tsernoglou, P.C.Van Der Vliet, P.A.Tucker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 6.00 / 3.20
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 61.370, 89.580, 149.770, 90.00, 90.00, 90.00
R / Rfree (%) 20.6 / 33.6

Zinc Binding Sites:

The binding sites of Zinc atom in the Early E2A Dna-Binding Protein (pdb code 1adv). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Early E2A Dna-Binding Protein, PDB code: 1adv:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 1adv

Go back to Zinc Binding Sites List in 1adv
Zinc binding site 1 out of 4 in the Early E2A Dna-Binding Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Early E2A Dna-Binding Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn530

b:11.7
occ:1.00
ND1 A:HIS286 2.0 2.0 1.0
SG A:CYS339 2.3 6.4 1.0
SG A:CYS355 2.3 9.5 1.0
SG A:CYS284 2.3 2.0 1.0
CE1 A:HIS286 2.8 2.0 1.0
CG A:HIS286 3.0 7.2 1.0
CB A:CYS339 3.1 2.3 1.0
CB A:CYS355 3.4 2.0 1.0
CB A:CYS284 3.4 6.8 1.0
CB A:HIS286 3.5 8.1 1.0
N A:HIS286 3.9 6.5 1.0
NE2 A:HIS286 3.9 2.0 1.0
CD2 A:HIS286 4.0 3.2 1.0
CA A:CYS339 4.1 5.3 1.0
N A:CYS355 4.1 5.5 1.0
CA A:HIS286 4.3 9.0 1.0
N A:LEU285 4.4 2.0 1.0
CA A:CYS355 4.4 3.9 1.0
CA A:CYS284 4.7 4.1 1.0
C A:CYS284 4.7 2.3 1.0
C A:CYS339 4.8 9.8 1.0
C A:LEU285 4.8 2.0 1.0
N A:VAL340 4.9 12.4 1.0

Zinc binding site 2 out of 4 in 1adv

Go back to Zinc Binding Sites List in 1adv
Zinc binding site 2 out of 4 in the Early E2A Dna-Binding Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Early E2A Dna-Binding Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn531

b:20.8
occ:1.00
SG A:CYS450 2.2 4.9 1.0
SG A:CYS398 2.3 20.2 1.0
SG A:CYS396 2.3 21.4 1.0
SG A:CYS467 2.3 28.4 1.0
CB A:CYS398 3.1 15.9 1.0
CB A:CYS450 3.2 16.5 1.0
CB A:CYS467 3.3 26.1 1.0
N A:CYS467 3.3 30.7 1.0
CB A:CYS396 3.4 15.9 1.0
N A:CYS398 3.5 23.2 1.0
CA A:CYS450 3.7 15.4 1.0
CA A:CYS467 3.9 23.9 1.0
CA A:CYS398 3.9 20.2 1.0
C A:ASN466 3.9 34.5 1.0
N A:CYS451 3.9 8.2 1.0
CA A:ASN466 4.1 33.2 1.0
N A:GLU397 4.3 24.1 1.0
C A:CYS450 4.3 12.9 1.0
C A:CYS396 4.5 20.3 1.0
O A:CYS467 4.6 14.3 1.0
CA A:CYS396 4.6 16.9 1.0
C A:CYS467 4.6 19.5 1.0
C A:GLU397 4.6 26.8 1.0
O A:ASN466 4.7 38.3 1.0
N A:ASN466 4.8 29.7 1.0
CA A:GLU397 4.9 28.1 1.0
N A:CYS450 5.0 13.7 1.0

Zinc binding site 3 out of 4 in 1adv

Go back to Zinc Binding Sites List in 1adv
Zinc binding site 3 out of 4 in the Early E2A Dna-Binding Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Early E2A Dna-Binding Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn530

b:19.9
occ:1.00
ND1 B:HIS286 2.0 21.1 1.0
SG B:CYS284 2.3 18.6 1.0
SG B:CYS355 2.3 15.2 1.0
SG B:CYS339 2.3 22.6 1.0
CE1 B:HIS286 2.8 24.7 1.0
CG B:HIS286 3.2 20.7 1.0
CB B:CYS284 3.2 11.4 1.0
CB B:CYS355 3.3 14.8 1.0
CB B:CYS339 3.3 27.8 1.0
CB B:HIS286 3.7 16.6 1.0
N B:CYS355 3.9 20.9 1.0
N B:HIS286 4.0 12.0 1.0
NE2 B:HIS286 4.1 24.1 1.0
CA B:CYS339 4.2 31.8 1.0
CA B:CYS355 4.2 18.5 1.0
CD2 B:HIS286 4.2 22.4 1.0
N B:LEU285 4.4 6.3 1.0
CA B:HIS286 4.5 12.2 1.0
CA B:CYS284 4.6 9.5 1.0
C B:CYS284 4.7 7.8 1.0
C B:SER354 4.8 20.7 1.0
N B:VAL340 5.0 33.5 1.0
C B:LEU285 5.0 10.4 1.0

Zinc binding site 4 out of 4 in 1adv

Go back to Zinc Binding Sites List in 1adv
Zinc binding site 4 out of 4 in the Early E2A Dna-Binding Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Early E2A Dna-Binding Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn531

b:25.1
occ:1.00
SG B:CYS396 2.3 15.7 1.0
SG B:CYS398 2.3 25.1 1.0
SG B:CYS467 2.3 26.1 1.0
SG B:CYS450 2.3 14.7 1.0
CB B:CYS396 3.2 21.4 1.0
N B:CYS467 3.2 32.1 1.0
CB B:CYS398 3.3 27.1 1.0
CB B:CYS467 3.3 25.0 1.0
CB B:CYS450 3.3 15.6 1.0
CA B:CYS450 3.7 13.6 1.0
CA B:CYS467 3.8 27.5 1.0
N B:CYS398 3.9 26.0 1.0
N B:CYS451 4.1 19.1 1.0
C B:ASN466 4.1 36.4 1.0
N B:GLU397 4.2 24.9 1.0
CA B:CYS398 4.2 27.6 1.0
O B:CYS467 4.3 23.5 1.0
CA B:ASN466 4.3 36.6 1.0
C B:CYS467 4.4 24.4 1.0
C B:CYS450 4.4 18.2 1.0
CA B:CYS396 4.4 21.8 1.0
C B:CYS396 4.5 24.7 1.0
C B:GLU397 4.5 28.0 1.0
CB B:PHE469 4.9 5.0 1.0
CA B:GLU397 4.9 26.7 1.0
N B:CYS450 4.9 6.8 1.0

Reference:

P.N.Kanellopoulos, D.Tsernoglou, P.C.Van Der Vliet, P.A.Tucker. Alternative Arrangements of the Protein Chain Are Possible For the Adenovirus Single-Stranded Dna Binding Protein. J.Mol.Biol. V. 257 1 1996.
ISSN: ISSN 0022-2836
PubMed: 8632448
DOI: 10.1006/JMBI.1996.0141
Page generated: Wed Dec 16 02:44:38 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy