Zinc in PDB 1adv: Early E2A Dna-Binding Protein

The structure of Early E2A Dna-Binding Protein, PDB code: 1adv was solved by P.N.Kanellopoulos, D.Tsernoglou, P.C.Van Der Vliet, P.A.Tucker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	6.00 / 3.20
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	61.370, 89.580, 149.770, 90.00, 90.00, 90.00
R / Rfree (%)	20.6 / 33.6

The binding sites of Zinc atom in the Early E2A Dna-Binding Protein (pdb code 1adv). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Early E2A Dna-Binding Protein, PDB code: 1adv:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the Early E2A Dna-Binding Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Early E2A Dna-Binding Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn530 b:11.7 occ:1.00 ND1 A:HIS286 2.0 2.0 1.0 SG A:CYS339 2.3 6.4 1.0 SG A:CYS355 2.3 9.5 1.0 SG A:CYS284 2.3 2.0 1.0 CE1 A:HIS286 2.8 2.0 1.0 CG A:HIS286 3.0 7.2 1.0 CB A:CYS339 3.1 2.3 1.0 CB A:CYS355 3.4 2.0 1.0 CB A:CYS284 3.4 6.8 1.0 CB A:HIS286 3.5 8.1 1.0 N A:HIS286 3.9 6.5 1.0 NE2 A:HIS286 3.9 2.0 1.0 CD2 A:HIS286 4.0 3.2 1.0 CA A:CYS339 4.1 5.3 1.0 N A:CYS355 4.1 5.5 1.0 CA A:HIS286 4.3 9.0 1.0 N A:LEU285 4.4 2.0 1.0 CA A:CYS355 4.4 3.9 1.0 CA A:CYS284 4.7 4.1 1.0 C A:CYS284 4.7 2.3 1.0 C A:CYS339 4.8 9.8 1.0 C A:LEU285 4.8 2.0 1.0 N A:VAL340 4.9 12.4 1.0

Zinc binding site 2 out of 4 in the Early E2A Dna-Binding Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Early E2A Dna-Binding Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn531 b:20.8 occ:1.00 SG A:CYS450 2.2 4.9 1.0 SG A:CYS398 2.3 20.2 1.0 SG A:CYS396 2.3 21.4 1.0 SG A:CYS467 2.3 28.4 1.0 CB A:CYS398 3.1 15.9 1.0 CB A:CYS450 3.2 16.5 1.0 CB A:CYS467 3.3 26.1 1.0 N A:CYS467 3.3 30.7 1.0 CB A:CYS396 3.4 15.9 1.0 N A:CYS398 3.5 23.2 1.0 CA A:CYS450 3.7 15.4 1.0 CA A:CYS467 3.9 23.9 1.0 CA A:CYS398 3.9 20.2 1.0 C A:ASN466 3.9 34.5 1.0 N A:CYS451 3.9 8.2 1.0 CA A:ASN466 4.1 33.2 1.0 N A:GLU397 4.3 24.1 1.0 C A:CYS450 4.3 12.9 1.0 C A:CYS396 4.5 20.3 1.0 O A:CYS467 4.6 14.3 1.0 CA A:CYS396 4.6 16.9 1.0 C A:CYS467 4.6 19.5 1.0 C A:GLU397 4.6 26.8 1.0 O A:ASN466 4.7 38.3 1.0 N A:ASN466 4.8 29.7 1.0 CA A:GLU397 4.9 28.1 1.0 N A:CYS450 5.0 13.7 1.0

Zinc binding site 3 out of 4 in the Early E2A Dna-Binding Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Early E2A Dna-Binding Protein within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn530 b:19.9 occ:1.00 ND1 B:HIS286 2.0 21.1 1.0 SG B:CYS284 2.3 18.6 1.0 SG B:CYS355 2.3 15.2 1.0 SG B:CYS339 2.3 22.6 1.0 CE1 B:HIS286 2.8 24.7 1.0 CG B:HIS286 3.2 20.7 1.0 CB B:CYS284 3.2 11.4 1.0 CB B:CYS355 3.3 14.8 1.0 CB B:CYS339 3.3 27.8 1.0 CB B:HIS286 3.7 16.6 1.0 N B:CYS355 3.9 20.9 1.0 N B:HIS286 4.0 12.0 1.0 NE2 B:HIS286 4.1 24.1 1.0 CA B:CYS339 4.2 31.8 1.0 CA B:CYS355 4.2 18.5 1.0 CD2 B:HIS286 4.2 22.4 1.0 N B:LEU285 4.4 6.3 1.0 CA B:HIS286 4.5 12.2 1.0 CA B:CYS284 4.6 9.5 1.0 C B:CYS284 4.7 7.8 1.0 C B:SER354 4.8 20.7 1.0 N B:VAL340 5.0 33.5 1.0 C B:LEU285 5.0 10.4 1.0

Zinc binding site 4 out of 4 in the Early E2A Dna-Binding Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Early E2A Dna-Binding Protein within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn531 b:25.1 occ:1.00 SG B:CYS396 2.3 15.7 1.0 SG B:CYS398 2.3 25.1 1.0 SG B:CYS467 2.3 26.1 1.0 SG B:CYS450 2.3 14.7 1.0 CB B:CYS396 3.2 21.4 1.0 N B:CYS467 3.2 32.1 1.0 CB B:CYS398 3.3 27.1 1.0 CB B:CYS467 3.3 25.0 1.0 CB B:CYS450 3.3 15.6 1.0 CA B:CYS450 3.7 13.6 1.0 CA B:CYS467 3.8 27.5 1.0 N B:CYS398 3.9 26.0 1.0 N B:CYS451 4.1 19.1 1.0 C B:ASN466 4.1 36.4 1.0 N B:GLU397 4.2 24.9 1.0 CA B:CYS398 4.2 27.6 1.0 O B:CYS467 4.3 23.5 1.0 CA B:ASN466 4.3 36.6 1.0 C B:CYS467 4.4 24.4 1.0 C B:CYS450 4.4 18.2 1.0 CA B:CYS396 4.4 21.8 1.0 C B:CYS396 4.5 24.7 1.0 C B:GLU397 4.5 28.0 1.0 CB B:PHE469 4.9 5.0 1.0 CA B:GLU397 4.9 26.7 1.0 N B:CYS450 4.9 6.8 1.0

P.N.Kanellopoulos, D.Tsernoglou, P.C.Van Der Vliet, P.A.Tucker. Alternative Arrangements of the Protein Chain Are Possible For the Adenovirus Single-Stranded Dna Binding Protein. J.Mol.Biol. V. 257 1 1996.
ISSN: ISSN 0022-2836
PubMed: 8632448
DOI: 10.1006/JMBI.1996.0141