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Zinc in PDB 1aaf: Nucleocapsid Zinc Fingers Detected in Retroviruses: Exafs Studies on Intact Viruses and the Solution-State Structure of the Nucleocapsid Protein From Hiv-1

Zinc Binding Sites:

The binding sites of Zinc atom in the Nucleocapsid Zinc Fingers Detected in Retroviruses: Exafs Studies on Intact Viruses and the Solution-State Structure of the Nucleocapsid Protein From Hiv-1 (pdb code 1aaf). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Nucleocapsid Zinc Fingers Detected in Retroviruses: Exafs Studies on Intact Viruses and the Solution-State Structure of the Nucleocapsid Protein From Hiv-1, PDB code: 1aaf:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 1aaf

Go back to Zinc Binding Sites List in 1aaf
Zinc binding site 1 out of 2 in the Nucleocapsid Zinc Fingers Detected in Retroviruses: Exafs Studies on Intact Viruses and the Solution-State Structure of the Nucleocapsid Protein From Hiv-1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Nucleocapsid Zinc Fingers Detected in Retroviruses: Exafs Studies on Intact Viruses and the Solution-State Structure of the Nucleocapsid Protein From Hiv-1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn56

b:0.0
occ:1.00
NE2 A:HIS23 2.0 0.0 1.0
SG A:CYS28 2.3 0.0 1.0
SG A:CYS18 2.3 0.0 1.0
SG A:CYS15 2.3 0.0 1.0
H A:CYS18 2.9 0.0 1.0
CD2 A:HIS23 3.0 0.0 1.0
CE1 A:HIS23 3.0 0.0 1.0
HD2 A:HIS23 3.1 0.0 1.0
HB2 A:CYS28 3.2 0.0 1.0
HB3 A:CYS18 3.2 0.0 1.0
HB3 A:ASN17 3.3 0.0 1.0
HB1 A:ALA30 3.3 0.0 1.0
HE1 A:HIS23 3.3 0.0 1.0
HB3 A:CYS15 3.3 0.0 1.0
CB A:CYS15 3.4 0.0 1.0
CB A:CYS18 3.4 0.0 1.0
CB A:CYS28 3.4 0.0 1.0
HB2 A:CYS15 3.6 0.0 1.0
N A:CYS18 3.6 0.0 1.0
HA A:CYS28 3.8 0.0 1.0
HA A:ALA25 3.9 0.0 1.0
CA A:CYS18 4.1 0.0 1.0
HD21 A:ASN17 4.1 0.0 1.0
CG A:HIS23 4.1 0.0 1.0
ND1 A:HIS23 4.1 0.0 1.0
H A:ASN17 4.2 0.0 1.0
HB3 A:CYS28 4.2 0.0 1.0
CA A:CYS28 4.2 0.0 1.0
HB2 A:CYS18 4.3 0.0 1.0
CB A:ALA30 4.3 0.0 1.0
CB A:ASN17 4.3 0.0 1.0
H A:GLY19 4.4 0.0 1.0
HB2 A:ALA30 4.4 0.0 1.0
HA A:ALA30 4.5 0.0 1.0
C A:ASN17 4.7 0.0 1.0
H A:ALA30 4.7 0.0 1.0
H A:LYS20 4.8 0.0 1.0
CA A:CYS15 4.8 0.0 1.0
N A:ASN17 4.8 0.0 1.0
CA A:ASN17 4.8 0.0 1.0
HB3 A:ALA25 4.8 0.0 1.0
HB2 A:ASN17 4.9 0.0 1.0
HA A:CYS18 4.9 0.0 1.0
N A:GLY19 4.9 0.0 1.0
CA A:ALA30 4.9 0.0 1.0
O A:ILE24 4.9 0.0 1.0
CA A:ALA25 5.0 0.0 1.0
HB2 A:LYS20 5.0 0.0 1.0
ND2 A:ASN17 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 1aaf

Go back to Zinc Binding Sites List in 1aaf
Zinc binding site 2 out of 2 in the Nucleocapsid Zinc Fingers Detected in Retroviruses: Exafs Studies on Intact Viruses and the Solution-State Structure of the Nucleocapsid Protein From Hiv-1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Nucleocapsid Zinc Fingers Detected in Retroviruses: Exafs Studies on Intact Viruses and the Solution-State Structure of the Nucleocapsid Protein From Hiv-1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn57

b:0.0
occ:1.00
NE2 A:HIS44 2.0 0.0 1.0
SG A:CYS39 2.3 0.0 1.0
SG A:CYS49 2.3 0.0 1.0
SG A:CYS36 2.3 0.0 1.0
CD2 A:HIS44 3.0 0.0 1.0
CE1 A:HIS44 3.0 0.0 1.0
HD2 A:HIS44 3.2 0.0 1.0
HB2 A:CYS49 3.2 0.0 1.0
HB3 A:CYS39 3.2 0.0 1.0
HB3 A:CYS36 3.2 0.0 1.0
H A:CYS39 3.2 0.0 1.0
HE1 A:HIS44 3.3 0.0 1.0
CB A:CYS36 3.4 0.0 1.0
CB A:CYS39 3.4 0.0 1.0
CB A:CYS49 3.4 0.0 1.0
HB3 A:LYS38 3.7 0.0 1.0
N A:CYS39 3.7 0.0 1.0
HB2 A:CYS36 3.8 0.0 1.0
HB3 A:CYS49 3.8 0.0 1.0
ND1 A:HIS44 4.1 0.0 1.0
CG A:HIS44 4.1 0.0 1.0
CA A:CYS39 4.2 0.0 1.0
H A:GLY40 4.2 0.0 1.0
HB2 A:CYS39 4.2 0.0 1.0
H A:LYS38 4.5 0.0 1.0
HA A:MET46 4.6 0.0 1.0
C A:LYS38 4.6 0.0 1.0
HB2 A:LYS41 4.6 0.0 1.0
CB A:LYS38 4.6 0.0 1.0
HB2 A:LYS38 4.6 0.0 1.0
HA A:CYS49 4.7 0.0 1.0
CA A:CYS49 4.7 0.0 1.0
CA A:CYS36 4.7 0.0 1.0
HG2 A:MET46 4.7 0.0 1.0
H A:LYS41 4.8 0.0 1.0
N A:GLY40 4.9 0.0 1.0
N A:LYS38 4.9 0.0 1.0
HA A:CYS39 4.9 0.0 1.0
CA A:LYS38 5.0 0.0 1.0
O A:CYS36 5.0 0.0 1.0
C A:CYS36 5.0 0.0 1.0

Reference:

M.F.Summers, L.E.Henderson, M.R.Chance, J.W.Bess Jr., T.L.South, P.R.Blake, I.Sagi, G.Perez-Alvarado, R.C.Sowder 3Rd., D.R.Hare, L.O.Arthur. Nucleocapsid Zinc Fingers Detected in Retroviruses: Exafs Studies of Intact Viruses and the Solution-State Structure of the Nucleocapsid Protein From Hiv-1. Protein Sci. V. 1 563 1992.
ISSN: ISSN 0961-8368
PubMed: 1304355
Page generated: Wed Dec 16 02:44:33 2020

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