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Zinc in PDB 1a8h: Methionyl-Trna Synthetase From Thermus Thermophilus

Enzymatic activity of Methionyl-Trna Synthetase From Thermus Thermophilus

All present enzymatic activity of Methionyl-Trna Synthetase From Thermus Thermophilus:
6.1.1.10;

Protein crystallography data

The structure of Methionyl-Trna Synthetase From Thermus Thermophilus, PDB code: 1a8h was solved by I.Sugiura, O.Nureki, Y.Ugaji, S.Kuwabara, B.Lober, R.Giege, D.Moras, S.Yokoyama, M.Konno, Riken Structural Genomics/Proteomics Initiative(Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 6.00 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 57.020, 82.470, 116.920, 90.00, 90.00, 90.00
R / Rfree (%) 20.5 / 28.3

Zinc Binding Sites:

The binding sites of Zinc atom in the Methionyl-Trna Synthetase From Thermus Thermophilus (pdb code 1a8h). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Methionyl-Trna Synthetase From Thermus Thermophilus, PDB code: 1a8h:

Zinc binding site 1 out of 1 in 1a8h

Go back to Zinc Binding Sites List in 1a8h
Zinc binding site 1 out of 1 in the Methionyl-Trna Synthetase From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Methionyl-Trna Synthetase From Thermus Thermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1000

b:34.7
occ:1.00
SG A:CYS130 2.1 29.7 1.0
SG A:CYS144 2.3 40.8 1.0
ND1 A:HIS147 2.3 23.9 1.0
SG A:CYS127 2.3 26.4 1.0
CE1 A:HIS147 3.1 26.8 1.0
CB A:CYS130 3.3 26.6 1.0
CB A:CYS127 3.4 21.9 1.0
CG A:HIS147 3.5 30.3 1.0
CB A:CYS144 3.6 42.6 1.0
O A:ILE146 3.7 44.5 1.0
N A:CYS130 3.7 23.4 1.0
CB A:HIS147 3.9 31.9 1.0
CA A:CYS130 4.0 24.6 1.0
C A:ILE146 4.3 41.2 1.0
NE2 A:HIS147 4.3 28.5 1.0
CE2 A:TYR134 4.3 26.3 1.0
CB A:SER129 4.3 25.6 1.0
OH A:TYR134 4.3 29.8 1.0
CD2 A:HIS147 4.5 26.2 1.0
CB A:ILE146 4.6 41.7 1.0
C A:SER129 4.6 23.9 1.0
CA A:CYS127 4.8 25.5 1.0
CZ A:TYR134 4.8 29.3 1.0
CG A:ARG149 4.9 50.2 1.0
CA A:ILE146 4.9 41.1 1.0
CA A:SER129 4.9 23.0 1.0
N A:HIS147 4.9 41.1 1.0
N A:ILE146 4.9 41.2 1.0
CA A:CYS144 5.0 44.7 1.0
N A:SER129 5.0 22.0 1.0

Reference:

I.Sugiura, O.Nureki, Y.Ugaji-Yoshikawa, S.Kuwabara, A.Shimada, M.Tateno, B.Lorber, R.Giege, D.Moras, S.Yokoyama, M.Konno. The 2.0 A Crystal Structure of Thermus Thermophilus Methionyl-Trna Synthetase Reveals Two Rna-Binding Modules. Structure V. 8 197 2000.
ISSN: ISSN 0969-2126
PubMed: 10673435
DOI: 10.1016/S0969-2126(00)00095-2
Page generated: Wed Dec 16 02:44:29 2020

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