Zinc in PDB 1a0q: 29G11 Complexed with Phenyl [1-(1-N-Succinylamino)Pentyl] Phosphonate

The structure of 29G11 Complexed with Phenyl [1-(1-N-Succinylamino)Pentyl] Phosphonate, PDB code: 1a0q was solved by J.L.Buchbinder, R.C.Stephenson, T.S.Scanlan, R.J.Fletterick, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 2.30
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	36.780, 82.610, 132.340, 90.00, 90.00, 90.00
R / Rfree (%)	20.3 / 27.5

The binding sites of Zinc atom in the 29G11 Complexed with Phenyl [1-(1-N-Succinylamino)Pentyl] Phosphonate (pdb code 1a0q). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the 29G11 Complexed with Phenyl [1-(1-N-Succinylamino)Pentyl] Phosphonate, PDB code: 1a0q:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in the 29G11 Complexed with Phenyl [1-(1-N-Succinylamino)Pentyl] Phosphonate


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of 29G11 Complexed with Phenyl [1-(1-N-Succinylamino)Pentyl] Phosphonate within 5.0Å range: probe atom residue distance (Å) B Occ L:Zn214 b:50.8 occ:1.00 OE1 L:GLU185 2.7 32.3 1.0 NE2 L:HIS189 2.8 44.4 1.0 OE2 L:GLU185 2.8 35.0 1.0 NH2 L:ARG155 3.0 51.8 1.0 CD L:GLU185 3.1 31.0 1.0 CE1 L:HIS189 3.4 40.2 1.0 CD2 L:HIS189 3.9 40.5 1.0 CZ L:ARG155 4.1 49.5 1.0 NH1 L:ARG155 4.5 40.8 1.0 ND1 L:HIS189 4.6 40.1 1.0 CG L:GLU185 4.6 24.5 1.0 CG L:HIS189 4.9 38.3 1.0

Zinc binding site 2 out of 3 in the 29G11 Complexed with Phenyl [1-(1-N-Succinylamino)Pentyl] Phosphonate


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of 29G11 Complexed with Phenyl [1-(1-N-Succinylamino)Pentyl] Phosphonate within 5.0Å range: probe atom residue distance (Å) B Occ H:Zn212 b:55.8 occ:1.00 NE2 H:HIS32 2.7 50.8 1.0 CE1 H:HIS32 3.1 52.2 1.0 OD2 H:ASP31 3.9 41.0 1.0 CD2 H:HIS32 3.9 54.0 1.0 ND1 H:HIS32 4.3 53.5 1.0 NH1 H:ARG94 4.4 25.0 1.0 CB H:ASP31 4.4 41.3 1.0 CG H:ASP31 4.6 41.2 1.0 CG H:HIS32 4.7 51.3 1.0 CZ H:ARG94 4.8 33.2 1.0 NH2 H:ARG94 4.9 26.9 1.0 CD2 H:TYR27 5.0 37.5 1.0

Zinc binding site 3 out of 3 in the 29G11 Complexed with Phenyl [1-(1-N-Succinylamino)Pentyl] Phosphonate


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of 29G11 Complexed with Phenyl [1-(1-N-Succinylamino)Pentyl] Phosphonate within 5.0Å range: probe atom residue distance (Å) B Occ H:Zn213 b:29.1 occ:1.00 OD1 H:ASP56 2.9 32.4 1.0 OD2 H:ASP56 2.9 40.3 1.0 CG H:ASP56 2.9 22.3 1.0 CE H:LYS58 3.1 32.3 1.0 NZ H:LYS58 3.3 36.5 1.0 CB H:ASP56 3.9 21.6 1.0 CD H:LYS58 4.4 31.4 1.0 OH H:TYR50 4.8 20.3 1.0 CG H:LYS58 4.8 29.6 1.0

J.L.Buchbinder, R.C.Stephenson, T.S.Scanlan, R.J.Fletterick. A Comparison of the Crystallographic Structures of Two Catalytic Antibodies with Esterase Activity. J.Mol.Biol. V. 282 1033 1998.
ISSN: ISSN 0022-2836
PubMed: 9753552
DOI: 10.1006/JMBI.1998.2025