Zinc in PDB 9qa6: Cryo-Em Structure of Thomasclavelia Ramosa Iga Peptidase (Igase) Active Site Mutant (S32-N876)

The binding sites of Zinc atom in the Cryo-Em Structure of Thomasclavelia Ramosa Iga Peptidase (Igase) Active Site Mutant (S32-N876) (pdb code 9qa6). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Cryo-Em Structure of Thomasclavelia Ramosa Iga Peptidase (Igase) Active Site Mutant (S32-N876), PDB code: 9qa6:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in the Cryo-Em Structure of Thomasclavelia Ramosa Iga Peptidase (Igase) Active Site Mutant (S32-N876)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Thomasclavelia Ramosa Iga Peptidase (Igase) Active Site Mutant (S32-N876) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1201 b:115.1 occ:1.00 NE2 A:HIS90 2.1 90.6 1.0 OD2 A:ASP78 2.1 89.4 1.0 OD1 A:ASP78 2.1 89.8 1.0 SG A:CYS126 2.3 97.6 1.0 CG A:ASP78 2.4 85.7 1.0 CD2 A:HIS90 3.0 90.2 1.0 CE1 A:HIS90 3.1 87.0 1.0 CB A:CYS126 3.2 90.8 1.0 CB A:ASP78 3.9 77.7 1.0 OG A:SER89 4.1 94.8 1.0 ND1 A:HIS90 4.1 88.3 1.0 CB A:SER101 4.2 77.8 1.0 CG A:HIS90 4.2 86.7 1.0 OG A:SER101 4.3 91.0 1.0 O A:ASP106 4.3 89.2 1.0 ND2 A:ASN108 4.5 87.7 1.0 O A:ALA79 4.5 96.6 1.0 O A:ASN128 4.6 96.7 1.0 N A:ASN108 4.6 73.8 1.0 CA A:SER107 4.6 71.0 1.0 CA A:CYS126 4.6 95.0 1.0 CG A:ASN108 4.7 85.7 1.0 OD1 A:ASN108 4.7 90.3 1.0 CA A:ASP78 4.8 78.4 1.0 C A:ASP106 4.8 77.3 1.0 CB A:ASN128 4.8 92.2 1.0 ND2 A:ASN128 4.9 99.5 1.0 N A:SER101 4.9 73.7 1.0 C A:SER107 4.9 74.1 1.0

Zinc binding site 2 out of 3 in the Cryo-Em Structure of Thomasclavelia Ramosa Iga Peptidase (Igase) Active Site Mutant (S32-N876)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of Thomasclavelia Ramosa Iga Peptidase (Igase) Active Site Mutant (S32-N876) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1202 b:119.4 occ:1.00 OE2 A:GLU551 2.2 96.5 1.0 SG A:CYS606 2.3 86.2 1.0 SG A:CYS619 2.3 79.8 1.0 SG A:CYS616 2.3 92.8 1.0 CB A:CYS606 3.2 73.7 1.0 CD A:GLU551 3.2 88.3 1.0 CB A:CYS616 3.5 70.1 1.0 CB A:CYS619 3.5 58.4 1.0 OE1 A:GLU551 3.7 88.4 1.0 N A:CYS616 3.9 67.2 1.0 CA A:CYS616 4.2 67.7 1.0 CG A:MET608 4.3 62.8 1.0 CG A:GLU551 4.3 74.7 1.0 ND2 A:ASN567 4.4 67.6 1.0 N A:CYS619 4.4 54.4 1.0 CA A:CYS619 4.6 52.3 1.0 CA A:CYS606 4.6 65.5 1.0 CB A:MET608 4.8 68.9 1.0 CB A:ASN567 4.8 61.3 1.0 OG A:SER602 4.8 79.4 1.0 C A:CYS616 4.8 67.7 1.0 O A:CYS616 4.9 72.9 1.0

Zinc binding site 3 out of 3 in the Cryo-Em Structure of Thomasclavelia Ramosa Iga Peptidase (Igase) Active Site Mutant (S32-N876)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Cryo-Em Structure of Thomasclavelia Ramosa Iga Peptidase (Igase) Active Site Mutant (S32-N876) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1203 b:126.8 occ:1.00 NE2 A:HIS543 2.0 85.3 1.0 OD1 A:ASP550 2.0 95.5 1.0 NE2 A:HIS539 2.0 76.1 1.0 O3 A:GOL1204 2.1 88.8 1.0 CD2 A:HIS539 2.8 70.8 1.0 CE1 A:HIS543 2.9 80.2 1.0 CD2 A:HIS543 3.0 71.8 1.0 CG A:ASP550 3.0 90.3 1.0 CE1 A:HIS539 3.2 70.3 1.0 C1 A:GOL1204 3.3 93.5 1.0 C3 A:GOL1204 3.4 89.5 1.0 OD2 A:ASP550 3.4 91.4 1.0 C2 A:GOL1204 3.7 92.9 1.0 O2 A:GOL1204 3.8 86.3 1.0 ND1 A:HIS543 4.0 72.3 1.0 CG A:HIS539 4.0 63.0 1.0 CG A:HIS543 4.1 67.2 1.0 ND1 A:HIS539 4.2 69.7 1.0 O1 A:GOL1204 4.2 94.0 1.0 CB A:ASP550 4.3 86.9 1.0 CE A:MET608 4.3 68.6 1.0 OH A:TYR552 4.3 98.6 1.0 CA A:ASP550 4.6 76.2 1.0 CE2 A:TYR552 4.8 92.1 1.0 N A:ASP550 4.9 74.3 1.0

J.S.Ramirez-Larrota, U.Eckhard, P.Guerra, P.Juyoux, F.X.Gomis-Ruth. Thomasclavelia Ramosa Iga Peptidase Active Site Mutant - E540A (Including Ntd) To Be Published.