Zinc in PDB 9mug: Structure of Schistosoma Mansoni HOP1 Chromatin Binding Region

The structure of Structure of Schistosoma Mansoni HOP1 Chromatin Binding Region, PDB code: 9mug was solved by A.R.Rodriguez, Q.Ye, J.Nguyen, K.Chau, K.D.Corbett, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.63 / 1.45
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	33.032, 64.959, 65.26, 90, 90, 90
R / Rfree (%)	12.9 / 15.8

The binding sites of Zinc atom in the Structure of Schistosoma Mansoni HOP1 Chromatin Binding Region (pdb code 9mug). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of Schistosoma Mansoni HOP1 Chromatin Binding Region, PDB code: 9mug:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Structure of Schistosoma Mansoni HOP1 Chromatin Binding Region


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Schistosoma Mansoni HOP1 Chromatin Binding Region within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn501 b:15.2 occ:1.00 ND1 A:HIS306 2.1 9.5 1.0 SG A:CYS309 2.3 8.7 1.0 SG A:CYS284 2.3 9.5 1.0 SG A:CYS286 2.4 9.8 1.0 HB2 A:HIS306 2.8 10.3 1.0 HB3 A:CYS286 2.9 11.3 1.0 HD2 A:ARG361 3.0 12.6 1.0 HB3 A:CYS284 3.0 10.1 1.0 CE1 A:HIS306 3.1 10.4 1.0 CG A:HIS306 3.1 9.4 1.0 H A:CYS286 3.2 9.5 1.0 HE1 A:HIS306 3.2 12.4 1.0 CB A:CYS286 3.2 9.4 1.0 CB A:CYS284 3.2 8.4 1.0 HB2 A:CYS309 3.3 9.3 1.0 H A:HIS306 3.3 10.4 1.0 CB A:CYS309 3.3 7.8 1.0 CB A:HIS306 3.4 8.6 1.0 HB3 A:CYS309 3.5 9.3 1.0 HB2 A:CYS284 3.7 10.1 1.0 N A:CYS286 3.9 7.9 1.0 CD A:ARG361 3.9 10.5 1.0 HB2 A:CYS286 3.9 11.3 1.0 N A:HIS306 4.1 8.7 1.0 HB3 A:CYS357 4.1 10.3 1.0 HB3 A:HIS306 4.2 10.3 1.0 CA A:CYS286 4.2 9.3 1.0 NE2 A:HIS306 4.2 10.9 1.0 CD2 A:HIS306 4.2 10.1 1.0 HD3 A:ARG361 4.3 12.6 1.0 CA A:HIS306 4.3 9.3 1.0 HH11 A:ARG361 4.4 14.4 1.0 CA A:CYS284 4.5 8.3 1.0 HD2 A:PRO285 4.6 12.1 1.0 H A:CYS309 4.6 10.6 1.0 HG3 A:ARG361 4.6 11.4 1.0 C A:CYS284 4.6 9.7 1.0 NE A:ARG361 4.7 10.4 1.0 CA A:CYS309 4.7 8.0 1.0 HG2 A:ARG361 4.7 11.4 1.0 CG A:ARG361 4.8 9.5 1.0 H A:VAL288 4.8 13.3 1.0 O A:HIS306 4.8 8.7 1.0 HA A:CYS286 4.8 11.1 1.0 N A:PRO285 4.9 10.1 1.0 HB3 A:GLN305 4.9 12.6 1.0 NH1 A:ARG361 4.9 12.0 1.0 HA A:CYS284 4.9 10.0 1.0 HA A:CYS309 4.9 9.6 1.0 HE2 A:HIS306 5.0 13.1 1.0 H A:GLY287 5.0 11.1 1.0

Zinc binding site 2 out of 2 in the Structure of Schistosoma Mansoni HOP1 Chromatin Binding Region


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of Schistosoma Mansoni HOP1 Chromatin Binding Region within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn502 b:17.0 occ:1.00 SG A:CYS301 2.3 11.7 1.0 SG A:CYS327 2.3 11.8 1.0 SG A:CYS298 2.3 10.5 1.0 SG A:CYS324 2.4 9.6 1.0 HB2 A:CYS327 3.0 12.8 1.0 H A:CYS301 3.0 15.9 1.0 HB3 A:CYS301 3.0 15.0 1.0 HB3 A:CYS298 3.2 12.4 1.0 CB A:CYS301 3.2 12.5 1.0 CB A:CYS298 3.3 10.4 1.0 HB3 A:CYS324 3.3 11.8 1.0 H A:CYS324 3.3 9.8 1.0 CB A:CYS327 3.3 10.7 1.0 H A:CYS327 3.4 11.1 1.0 HB2 A:CYS298 3.4 12.4 1.0 CB A:CYS324 3.4 9.8 1.0 N A:CYS301 3.5 13.3 1.0 HB3 A:CYS327 3.9 12.8 1.0 HA3 A:GLY300 4.0 18.0 1.0 CA A:CYS301 4.0 13.1 1.0 N A:CYS324 4.0 8.2 1.0 HB2 A:CYS301 4.0 15.0 1.0 H A:GLY300 4.1 18.8 1.0 N A:CYS327 4.1 9.2 1.0 O A:HOH717 4.2 18.4 1.0 HB2 A:CYS324 4.2 11.8 1.0 CA A:CYS324 4.3 8.9 1.0 C A:GLY300 4.3 15.4 1.0 CA A:CYS327 4.3 9.1 1.0 HH21 A:ARG283 4.3 14.7 1.0 HB A:ILE326 4.4 11.4 1.0 CA A:GLY300 4.5 15.0 1.0 HE22 A:GLN305 4.6 11.9 1.0 N A:GLY300 4.6 15.7 1.0 CA A:CYS298 4.7 10.4 1.0 HA A:CYS301 4.7 15.7 1.0 HA A:CYS327 4.7 10.9 1.0 H A:LYS303 4.7 16.0 1.0 H A:ASP302 4.8 17.1 1.0 HZ2 A:LYS331 4.8 45.9 1.0 O A:HOH791 4.8 27.0 1.0 HA A:VAL323 4.8 10.2 1.0 HG13 A:VAL323 4.9 15.4 1.0 C A:CYS324 4.9 8.0 1.0 C A:CYS301 4.9 13.2 1.0 HB2 A:LYS303 5.0 16.1 1.0

A.A.Rodriguez, K.D.Corbett. Structure of Schistosoma Mansoni HOP1 Chromatin Binding Region To Be Published.