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Zinc in PDB 9lin: Crystal Structure of Apo DGCA1_L83A

Protein crystallography data

The structure of Crystal Structure of Apo DGCA1_L83A, PDB code: 9lin was solved by Y.Bao, Y.Li, X.Zhang, Z.Xie, P.Song, J.Huang, Z.Wan, P.Ji, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.24 / 1.85
Space group P 63
Cell size a, b, c (Å), α, β, γ (°) 84.488, 84.488, 67.615, 90, 90, 120
R / Rfree (%) 15.8 / 19.9

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Apo DGCA1_L83A (pdb code 9lin). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Apo DGCA1_L83A, PDB code: 9lin:

Zinc binding site 1 out of 1 in 9lin

Go back to Zinc Binding Sites List in 9lin
Zinc binding site 1 out of 1 in the Crystal Structure of Apo DGCA1_L83A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Apo DGCA1_L83A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn301

b:11.2
occ:1.00
NE2 A:HIS122 2.0 6.1 1.0
ND1 A:HIS81 2.1 8.3 1.0
O A:HOH452 2.2 16.7 1.0
CE1 A:HIS81 2.9 8.8 1.0
CD2 A:HIS122 3.0 7.5 1.0
CE1 A:HIS122 3.0 7.9 1.0
CG A:HIS81 3.1 10.5 1.0
CB A:HIS81 3.5 4.7 1.0
O A:HOH480 3.9 15.5 1.0
NE2 A:HIS81 4.1 10.1 1.0
ND1 A:HIS122 4.1 10.1 1.0
O A:HOH612 4.1 31.5 1.0
CG A:HIS122 4.1 8.3 1.0
CD2 A:HIS81 4.2 6.7 1.0
OE2 A:GLU62 4.2 15.5 1.0
N A:ALA82 4.2 7.5 1.0
O A:HOH597 4.2 36.0 1.0
C A:HIS81 4.5 6.9 1.0
O A:ALA82 4.5 10.9 1.0
C A:ALA82 4.6 6.6 1.0
CA A:HIS81 4.7 9.9 1.0
CA A:ALA82 4.8 7.0 1.0

Reference:

Y.Bao, Y.Li, X.Zhang, Z.Xie, P.Song, J.Huang, Z.Wan, P.Ji. Computational Design of Gamma-Carbonic Anhydrase Into A Thermostable and Organic Solvent-Tolerant Metalloreductase To Be Published.
Page generated: Fri Aug 22 18:33:23 2025

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