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Zinc in PDB 9ldp: Zn-Carbonic Anhydrase II Soaked with 3NT Under 15 Atm CO2

Enzymatic activity of Zn-Carbonic Anhydrase II Soaked with 3NT Under 15 Atm CO2

All present enzymatic activity of Zn-Carbonic Anhydrase II Soaked with 3NT Under 15 Atm CO2:
4.2.1.1;

Protein crystallography data

The structure of Zn-Carbonic Anhydrase II Soaked with 3NT Under 15 Atm CO2, PDB code: 9ldp was solved by C.U.Kim, J.K.Kim, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.91 / 1.14
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 41.787, 41.202, 71.952, 90, 104.08, 90
R / Rfree (%) 15.2 / 17.5

Zinc Binding Sites:

The binding sites of Zinc atom in the Zn-Carbonic Anhydrase II Soaked with 3NT Under 15 Atm CO2 (pdb code 9ldp). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Zn-Carbonic Anhydrase II Soaked with 3NT Under 15 Atm CO2, PDB code: 9ldp:

Zinc binding site 1 out of 1 in 9ldp

Go back to Zinc Binding Sites List in 9ldp
Zinc binding site 1 out of 1 in the Zn-Carbonic Anhydrase II Soaked with 3NT Under 15 Atm CO2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Zn-Carbonic Anhydrase II Soaked with 3NT Under 15 Atm CO2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn301

b:6.1
occ:1.00
O A:HOH418 1.9 10.4 1.0
NE2 A:HIS94 2.0 7.0 1.0
NE2 A:HIS96 2.0 6.1 1.0
ND1 A:HIS119 2.0 5.3 1.0
CE1 A:HIS119 2.9 5.5 1.0
CD2 A:HIS94 3.0 6.8 1.0
CE1 A:HIS94 3.0 6.8 1.0
CD2 A:HIS96 3.0 5.6 1.0
CE1 A:HIS96 3.0 6.4 1.0
CG A:HIS119 3.1 5.0 1.0
O1 A:CO2302 3.3 13.1 1.0
CB A:HIS119 3.6 5.2 1.0
O A:HOH560 3.6 13.7 0.5
C A:CO2302 3.8 13.9 1.0
OG1 A:THR199 3.8 6.6 1.0
OE1 A:GLU106 4.0 6.5 1.0
NE2 A:HIS119 4.1 5.7 1.0
CG A:HIS94 4.1 7.4 1.0
ND1 A:HIS94 4.1 7.5 1.0
CG A:HIS96 4.2 5.8 1.0
ND1 A:HIS96 4.2 6.5 1.0
CD2 A:HIS119 4.2 5.5 1.0
O A:HOH475 4.3 22.8 1.0
O A:HOH602 4.4 16.3 1.0
O2 A:CO2302 4.4 16.6 1.0
O A:HOH510 4.4 16.9 0.5
CD A:GLU106 4.9 6.1 1.0
O A:HOH613 4.9 29.1 1.0

Reference:

C.U.Kim, J.K.Kim. Temperature Series of Human Carbonic Anhydrase II with Photolysis of Caged CO2 To Be Published.
Page generated: Fri Aug 22 18:33:02 2025

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