Zinc in PDB 9l4c: Atr Spiral -Atrip Bound with Rp-3500

All present enzymatic activity of Atr Spiral -Atrip Bound with Rp-3500:
2.7.11.1;

The binding sites of Zinc atom in the Atr Spiral -Atrip Bound with Rp-3500 (pdb code 9l4c). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Atr Spiral -Atrip Bound with Rp-3500, PDB code: 9l4c:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Atr Spiral -Atrip Bound with Rp-3500


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Atr Spiral -Atrip Bound with Rp-3500 within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn801 b:50.0 occ:1.00 SG D:CYS682 1.1 111.5 1.0 SG D:CYS680 1.7 140.5 1.0 HB3 D:CYS682 1.7 111.5 1.0 CB D:CYS682 1.8 111.5 1.0 SG D:CYS630 1.8 111.9 1.0 HB2 D:CYS682 2.4 111.5 1.0 HB2 D:CYS630 2.5 111.9 1.0 CB D:CYS630 2.7 111.9 1.0 H D:CYS630 2.7 111.9 1.0 HB2 D:CYS680 2.7 140.5 1.0 CB D:CYS680 2.9 140.5 1.0 CA D:CYS682 3.1 111.5 1.0 H D:CYS682 3.1 111.5 1.0 N D:CYS630 3.3 111.9 1.0 HB3 D:CYS680 3.3 140.5 1.0 SG D:CYS624 3.4 140.3 1.0 HB3 D:CYS630 3.4 111.9 1.0 N D:CYS682 3.5 111.5 1.0 CA D:CYS630 3.5 111.9 1.0 HA D:CYS682 3.8 111.5 1.0 C D:CYS682 3.9 111.5 1.0 H D:ASN683 4.0 108.0 1.0 HA D:CYS630 4.0 111.9 1.0 N D:ASN683 4.2 108.0 1.0 H D:LEU633 4.3 97.1 1.0 CA D:CYS680 4.4 140.5 1.0 O D:SER627 4.4 148.6 1.0 HB2 D:CYS624 4.5 140.3 1.0 C D:GLY629 4.5 130.8 1.0 CB D:LEU633 4.5 97.1 1.0 HA2 D:GLY629 4.5 130.8 1.0 CB D:CYS624 4.7 140.3 1.0 O D:CYS682 4.7 111.5 1.0 N D:LEU633 4.7 97.1 1.0 C D:CYS630 4.8 111.9 1.0 C D:CYS680 4.8 140.5 1.0 H D:GLN681 4.8 114.3 1.0 C D:GLN681 4.9 114.3 1.0 HE1 D:TYR636 4.9 100.1 1.0 N D:GLN681 4.9 114.3 1.0 N D:CYS680 4.9 140.5 1.0 CA D:GLY629 5.0 130.8 1.0

Zinc binding site 2 out of 2 in the Atr Spiral -Atrip Bound with Rp-3500


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Atr Spiral -Atrip Bound with Rp-3500 within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn801 b:50.0 occ:1.00 HB2 C:CYS624 1.9 126.7 1.0 SG C:CYS624 1.9 126.7 1.0 CB C:CYS624 2.1 126.7 1.0 SG C:CYS682 2.1 112.0 1.0 SG C:CYS680 2.2 132.6 1.0 HB3 C:CYS624 2.2 126.7 1.0 HB2 C:CYS680 2.9 132.6 1.0 HB3 C:CYS630 3.1 107.2 1.0 CB C:CYS680 3.1 132.6 1.0 HB3 C:CYS682 3.2 112.0 1.0 CB C:CYS682 3.3 112.0 1.0 SG C:CYS630 3.4 107.2 1.0 HB3 C:CYS680 3.5 132.6 1.0 CA C:CYS624 3.5 126.7 1.0 H C:ASN683 3.6 104.5 1.0 CB C:CYS630 3.6 107.2 1.0 H C:CYS682 3.6 112.0 1.0 HA C:SER627 3.7 130.2 1.0 HB2 C:CYS630 3.7 107.2 1.0 HA C:CYS624 3.8 126.7 1.0 N C:ASN683 3.9 104.5 1.0 CA C:CYS682 4.0 112.0 1.0 N C:CYS682 4.0 112.0 1.0 HB2 C:CYS682 4.1 112.0 1.0 CB C:THR676 4.1 150.6 1.0 H C:CYS624 4.2 126.7 1.0 C C:CYS682 4.2 112.0 1.0 N C:CYS624 4.4 126.7 1.0 O C:CYS624 4.4 126.7 1.0 C C:CYS624 4.4 126.7 1.0 CA C:CYS680 4.4 132.6 1.0 HA C:CYS680 4.5 132.6 1.0 HA C:THR676 4.5 150.6 1.0 O C:HIS626 4.5 126.7 1.0 CA C:SER627 4.6 130.2 1.0 CB C:LEU632 4.7 70.5 1.0 H C:CYS630 4.8 107.2 1.0 HA C:ASN683 4.8 104.5 1.0 H C:LEU633 4.8 75.6 1.0 CA C:ASN683 4.9 104.5 1.0 C C:HIS626 4.9 126.7 1.0 CA C:THR676 4.9 150.6 1.0 HA C:CYS682 4.9 112.0 1.0 CA C:CYS630 5.0 107.2 1.0 H C:GLN681 5.0 116.2 1.0 C C:CYS680 5.0 132.6 1.0 N C:SER627 5.0 130.2 1.0

G.Wang, P.Wang, Z.Zheng, Q.Zhang, C.Xu, X.Xu, L.Jian, Z.Zhao, G.Cai, X.Wang. Molecular Architecture and Inhibition Mechanism of Human Atr-Atrip Sci Bull (Beijing) 2025.
ISSN: ESSN 2095-9281
DOI: 10.1016/J.SCIB.2025.05.009