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Zinc in PDB 9kdg: Cryoem Structure of Calcineurin-Fusion Human Endothelin Receptor Type- B in the Ligand-Free Form

Enzymatic activity of Cryoem Structure of Calcineurin-Fusion Human Endothelin Receptor Type- B in the Ligand-Free Form

All present enzymatic activity of Cryoem Structure of Calcineurin-Fusion Human Endothelin Receptor Type- B in the Ligand-Free Form:
5.2.1.8;

Other elements in 9kdg:

The structure of Cryoem Structure of Calcineurin-Fusion Human Endothelin Receptor Type- B in the Ligand-Free Form also contains other interesting chemical elements:

Calcium (Ca) 4 atoms
Iron (Fe) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Cryoem Structure of Calcineurin-Fusion Human Endothelin Receptor Type- B in the Ligand-Free Form (pdb code 9kdg). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Cryoem Structure of Calcineurin-Fusion Human Endothelin Receptor Type- B in the Ligand-Free Form, PDB code: 9kdg:

Zinc binding site 1 out of 1 in 9kdg

Go back to Zinc Binding Sites List in 9kdg
Zinc binding site 1 out of 1 in the Cryoem Structure of Calcineurin-Fusion Human Endothelin Receptor Type- B in the Ligand-Free Form


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryoem Structure of Calcineurin-Fusion Human Endothelin Receptor Type- B in the Ligand-Free Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1706

b:79.7
occ:1.00
OD2 A:ASP1103 2.0 57.2 1.0
OD1 A:ASP1103 2.3 57.2 1.0
ND1 A:HIS1266 2.3 69.0 1.0
NE2 A:HIS1184 2.3 61.1 1.0
CG A:ASP1103 2.4 57.2 1.0
OD1 A:ASN1135 2.4 57.6 1.0
CE1 A:HIS1184 2.6 61.1 1.0
CE1 A:HIS1266 2.9 69.0 1.0
FE A:FE1705 3.3 75.6 1.0
CG A:HIS1266 3.5 69.0 1.0
CG A:ASN1135 3.5 57.6 1.0
CD2 A:HIS1184 3.6 61.1 1.0
CB A:ASP1103 3.8 57.2 1.0
ND1 A:HIS1184 3.9 61.1 1.0
CD2 A:HIS1136 4.0 53.6 1.0
CB A:HIS1266 4.0 69.0 1.0
CA A:HIS1266 4.1 69.0 1.0
OD2 A:ASP1075 4.2 57.7 1.0
NE2 A:HIS1266 4.2 69.0 1.0
ND2 A:ASN1135 4.2 57.6 1.0
NE2 A:HIS1077 4.3 46.2 1.0
OD1 A:ASP1075 4.3 57.7 1.0
N A:ASN1135 4.4 57.6 1.0
CG A:HIS1184 4.4 61.1 1.0
CD2 A:HIS1266 4.4 69.0 1.0
CG A:ASP1075 4.5 57.7 1.0
CB A:ASN1135 4.7 57.6 1.0
NE2 A:HIS1136 4.7 53.6 1.0
CE1 A:HIS1077 4.7 46.2 1.0
CA A:ASP1103 4.8 57.2 1.0

Reference:

W.Shihoya, H.Akasaka, P.A.Jordan, A.Lechner, B.K.Okada, G.Costa Machado Da Cruz, F.K.Sano, T.Tanaka, R.Kawahara, R.Chaudhari, H.Masamune, M.J.Burk, O.Nureki. Structure of A Lasso Peptide Bound Et B Receptor Provides Insights Into the Mechanism of Gpcr Inverse Agonism. Nat Commun V. 16 3446 2025.
ISSN: ESSN 2041-1723
PubMed: 40263271
DOI: 10.1038/S41467-025-57960-X
Page generated: Fri Aug 22 18:30:31 2025

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