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Zinc in PDB 9kdf: Cryoem Structure of Calcineurin-Fusion Human Endothelin Receptor Type- B in Complex with Res-701-3

Enzymatic activity of Cryoem Structure of Calcineurin-Fusion Human Endothelin Receptor Type- B in Complex with Res-701-3

All present enzymatic activity of Cryoem Structure of Calcineurin-Fusion Human Endothelin Receptor Type- B in Complex with Res-701-3:
5.2.1.8;

Other elements in 9kdf:

The structure of Cryoem Structure of Calcineurin-Fusion Human Endothelin Receptor Type- B in Complex with Res-701-3 also contains other interesting chemical elements:

Iron (Fe) 1 atom
Calcium (Ca) 4 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Cryoem Structure of Calcineurin-Fusion Human Endothelin Receptor Type- B in Complex with Res-701-3 (pdb code 9kdf). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Cryoem Structure of Calcineurin-Fusion Human Endothelin Receptor Type- B in Complex with Res-701-3, PDB code: 9kdf:

Zinc binding site 1 out of 1 in 9kdf

Go back to Zinc Binding Sites List in 9kdf
Zinc binding site 1 out of 1 in the Cryoem Structure of Calcineurin-Fusion Human Endothelin Receptor Type- B in Complex with Res-701-3


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryoem Structure of Calcineurin-Fusion Human Endothelin Receptor Type- B in Complex with Res-701-3 within 5.0Å range:
probe atom residue distance (Å) B Occ
R:Zn1506

b:73.4
occ:1.00
 FE R:FE1505 1.2 68.7 1.0
OD1 R:ASN1126 2.0 65.6 1.0
OD2 R:ASP1094 2.0 62.7 1.0
ND1 R:HIS1257 2.3 68.7 1.0
NE2 R:HIS1175 2.3 70.6 1.0
CG R:ASP1094 2.7 62.7 1.0
OD1 R:ASP1094 2.8 62.7 1.0
CE1 R:HIS1257 2.9 68.7 1.0
CE1 R:HIS1175 2.9 70.6 1.0
CG R:ASN1126 3.1 65.6 1.0
CG R:HIS1257 3.3 68.7 1.0
CD2 R:HIS1175 3.5 70.6 1.0
ND2 R:ASN1126 3.7 65.6 1.0
CD2 R:HIS1127 3.8 62.8 1.0
CB R:HIS1257 3.9 68.7 1.0
NE2 R:HIS1257 4.0 68.7 1.0
N R:ASN1126 4.1 65.6 1.0
OD2 R:ASP1066 4.1 63.5 1.0
CB R:ASP1094 4.2 62.7 1.0
ND1 R:HIS1175 4.2 70.6 1.0
CA R:HIS1257 4.2 68.7 1.0
CB R:ASN1126 4.2 65.6 1.0
CD2 R:HIS1257 4.3 68.7 1.0
CG R:HIS1175 4.5 70.6 1.0
NE2 R:HIS1127 4.6 62.8 1.0
OD1 R:ASP1066 4.6 63.5 1.0
CA R:ASN1126 4.7 65.6 1.0
N R:HIS1127 4.7 62.8 1.0
CG R:ASP1066 4.8 63.5 1.0
O R:LEU1207 4.8 77.8 1.0
CG R:HIS1127 4.9 62.8 1.0

Reference:

W.Shihoya, H.Akasaka, P.A.Jordan, A.Lechner, B.K.Okada, G.Costa Machado Da Cruz, F.K.Sano, T.Tanaka, R.Kawahara, R.Chaudhari, H.Masamune, M.J.Burk, O.Nureki. Structure of A Lasso Peptide Bound Et B Receptor Provides Insights Into the Mechanism of Gpcr Inverse Agonism. Nat Commun V. 16 3446 2025.
ISSN: ESSN 2041-1723
PubMed: 40263271
DOI: 10.1038/S41467-025-57960-X
Page generated: Fri Aug 22 18:30:31 2025

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