Zinc in PDB 9j82: Protease in Complex with Fab

The binding sites of Zinc atom in the Protease in Complex with Fab (pdb code 9j82). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Protease in Complex with Fab, PDB code: 9j82:

Zinc binding site 1 out of 1 in the Protease in Complex with Fab


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Protease in Complex with Fab within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn501 b:224.6 occ:1.00 OD2 A:ASP379 2.0 245.2 1.0 OD1 A:ASP379 2.0 245.2 1.0 NE2 A:HIS17 2.0 202.9 1.0 NE2 A:HIS21 2.0 202.1 1.0 CG A:ASP379 2.2 245.2 1.0 CE1 A:HIS17 2.6 202.9 1.0 CD2 A:HIS21 2.9 202.1 1.0 CE1 A:HIS21 3.1 202.1 1.0 CD2 A:HIS17 3.3 202.9 1.0 CB A:ASP379 3.6 245.2 1.0 ND1 A:HIS17 3.8 202.9 1.0 CG A:HIS21 4.0 202.1 1.0 ND1 A:HIS21 4.1 202.1 1.0 CG A:HIS17 4.2 202.9 1.0 ND2 A:ASN371 4.4 217.9 1.0 CA A:ASP379 4.5 245.2 1.0 CD A:PRO95 4.6 201.5 1.0 OE1 A:GLU18 4.7 205.6 1.0 CA A:GLY94 4.8 204.3 1.0 O A:ALA91 5.0 232.1 1.0

K.Asahi, M.Hirose, R.Aruga, Y.Shimizu, M.Tajiri, T.Tanaka, Y.Adachi, Y.Tanaka, M.K.Kaneko, Y.Kato, S.Akashi, Y.Akiyama, Y.Hizukuri, T.Kato, T.Nogi. Cryo-Em Structure of the Bacterial Intramembrane Metalloprotease Rsep in the Substrate-Bound State. Sci Adv 2025.
ISSN: ESSN 2375-2548
DOI: 10.1126/SCIADV.ADU0925