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Zinc in PDB 9j3p: Human Pigment Epithelium-Derived Factor with Zinc Ions Crystallized in P2(1)2(1)2(1) Space Group
Protein crystallography data
The structure of Human Pigment Epithelium-Derived Factor with Zinc Ions Crystallized in P2(1)2(1)2(1) Space Group, PDB code: 9j3p
was solved by
A.S.Belousov,
D.V.Chistyakov,
V.E.Baksheeva,
T.K.Bulgakov,
S.S.Bukhdruker,
A.A.Zamyatnin,
D.V.Zinchenko,
P.O.Tsvetkov,
S.E.Permyakov,
E.Y.Zernii,
V.I.Borshchevskiy,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 19.95 / 2.10 |
| Space group | P 21 21 21 |
| Cell size a, b, c (Å), α, β, γ (°) | 74.234, 131.567, 227.831, 90, 90, 90 |
| R / Rfree (%) | 21.7 / 25.1 |
Zinc Binding Sites:
The binding sites of Zinc atom in the Human Pigment Epithelium-Derived Factor with Zinc Ions Crystallized in P2(1)2(1)2(1) Space Group
(pdb code 9j3p). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 7 binding sites of Zinc where determined in the Human Pigment Epithelium-Derived Factor with Zinc Ions Crystallized in P2(1)2(1)2(1) Space Group, PDB code: 9j3p:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7;
In total 7 binding sites of Zinc where determined in the Human Pigment Epithelium-Derived Factor with Zinc Ions Crystallized in P2(1)2(1)2(1) Space Group, PDB code: 9j3p:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7;
Zinc binding site 1 out of 7 in 9j3p
Go back to
Zinc Binding Sites List in 9j3p
Zinc binding site 1 out
of 7 in the Human Pigment Epithelium-Derived Factor with Zinc Ions Crystallized in P2(1)2(1)2(1) Space Group
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Human Pigment Epithelium-Derived Factor with Zinc Ions Crystallized in P2(1)2(1)2(1) Space Group within 5.0Å range:
|
Zinc binding site 2 out of 7 in 9j3p
Go back to
Zinc Binding Sites List in 9j3p
Zinc binding site 2 out
of 7 in the Human Pigment Epithelium-Derived Factor with Zinc Ions Crystallized in P2(1)2(1)2(1) Space Group
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Human Pigment Epithelium-Derived Factor with Zinc Ions Crystallized in P2(1)2(1)2(1) Space Group within 5.0Å range:
|
Zinc binding site 3 out of 7 in 9j3p
Go back to
Zinc Binding Sites List in 9j3p
Zinc binding site 3 out
of 7 in the Human Pigment Epithelium-Derived Factor with Zinc Ions Crystallized in P2(1)2(1)2(1) Space Group
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Zinc with other atoms in the Zn binding
site number 3 of Human Pigment Epithelium-Derived Factor with Zinc Ions Crystallized in P2(1)2(1)2(1) Space Group within 5.0Å range:
|
Zinc binding site 4 out of 7 in 9j3p
Go back to
Zinc Binding Sites List in 9j3p
Zinc binding site 4 out
of 7 in the Human Pigment Epithelium-Derived Factor with Zinc Ions Crystallized in P2(1)2(1)2(1) Space Group
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Zinc with other atoms in the Zn binding
site number 4 of Human Pigment Epithelium-Derived Factor with Zinc Ions Crystallized in P2(1)2(1)2(1) Space Group within 5.0Å range:
|
Zinc binding site 5 out of 7 in 9j3p
Go back to
Zinc Binding Sites List in 9j3p
Zinc binding site 5 out
of 7 in the Human Pigment Epithelium-Derived Factor with Zinc Ions Crystallized in P2(1)2(1)2(1) Space Group
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Zinc with other atoms in the Zn binding
site number 5 of Human Pigment Epithelium-Derived Factor with Zinc Ions Crystallized in P2(1)2(1)2(1) Space Group within 5.0Å range:
|
Zinc binding site 6 out of 7 in 9j3p
Go back to
Zinc Binding Sites List in 9j3p
Zinc binding site 6 out
of 7 in the Human Pigment Epithelium-Derived Factor with Zinc Ions Crystallized in P2(1)2(1)2(1) Space Group
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Zinc with other atoms in the Zn binding
site number 6 of Human Pigment Epithelium-Derived Factor with Zinc Ions Crystallized in P2(1)2(1)2(1) Space Group within 5.0Å range:
|
Zinc binding site 7 out of 7 in 9j3p
Go back to
Zinc Binding Sites List in 9j3p
Zinc binding site 7 out
of 7 in the Human Pigment Epithelium-Derived Factor with Zinc Ions Crystallized in P2(1)2(1)2(1) Space Group
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Zinc with other atoms in the Zn binding
site number 7 of Human Pigment Epithelium-Derived Factor with Zinc Ions Crystallized in P2(1)2(1)2(1) Space Group within 5.0Å range:
|
Reference:
D.V.Chistyakov,
M.P.Shevelyova,
E.N.Iomdina,
V.E.Baksheeva,
L.Wu,
N.G.Shebardina,
A.M.Moysenovich,
T.K.Bulgakov,
S.Y.Petrov,
V.V.Tiulina,
E.I.Pogodina,
O.S.Gancharova,
A.S.Belousov,
O.M.Filippova,
A.V.Baldin,
S.V.Goriainov,
A.I.Nikolskaya,
A.O.Zalevsky,
A.A.Deviatkin,
A.A.Vologzhannikova,
N.V.Gorokhovets,
E.A.Litus,
A.A.Zamyatnin,
S.V.Komarov,
F.Devred,
M.G.Sergeeva,
A.A.Zamyatnin Jr,
I.I.Senin,
D.V.Zinchenko,
P.O.Tsvetkov,
V.I.Borshchevskiy,
S.E.Permyakov,
E.Y.Zernii.
Zinc-Mediated Mechanism of Neurodegeneration in Glaucoma: A Role of Pigment Epithelium-Derived Factor To Be Published.
Page generated: Fri Aug 22 18:19:19 2025
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