Zinc in PDB 9h9m: Complex 4 (Head) 30S-GE81112 (Weak Residual Trna)

The structure of Complex 4 (Head) 30S-GE81112 (Weak Residual Trna) also contains other interesting chemical elements:

Magnesium

(Mg)

42 atoms

The binding sites of Zinc atom in the Complex 4 (Head) 30S-GE81112 (Weak Residual Trna) (pdb code 9h9m). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Complex 4 (Head) 30S-GE81112 (Weak Residual Trna), PDB code: 9h9m:

Zinc binding site 1 out of 1 in the Complex 4 (Head) 30S-GE81112 (Weak Residual Trna)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Complex 4 (Head) 30S-GE81112 (Weak Residual Trna) within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn301 b:140.6 occ:1.00 OD2 B:ASP205 1.9 103.8 1.0 OD2 B:ASP188 2.0 94.9 1.0 OD1 B:ASP204 2.1 101.4 1.0 NE2 B:HIS18 2.4 117.0 1.0 CG B:ASP205 2.7 100.7 1.0 CG B:ASP204 2.8 97.0 1.0 CG B:ASP188 2.9 94.1 1.0 OD1 B:ASP205 3.1 102.8 1.0 ND2 B:ASN203 3.2 118.5 1.0 N B:ASP204 3.2 101.4 1.0 OD2 B:ASP204 3.2 92.2 1.0 CE1 B:HIS18 3.3 116.5 1.0 CD2 B:HIS18 3.4 116.4 1.0 CB B:ASP188 3.4 92.1 1.0 N B:ASP205 3.6 96.5 1.0 CG B:ASN203 3.7 118.3 1.0 OD1 B:ASP188 3.9 94.0 1.0 CA B:ASP204 3.9 95.0 1.0 CB B:ASP204 3.9 94.1 1.0 CB B:ASP205 4.0 96.5 1.0 C B:ASP204 4.0 94.6 1.0 OD1 B:ASN203 4.1 118.5 1.0 C B:ASN203 4.2 115.3 1.0 CA B:ASN203 4.3 116.8 1.0 CA B:ASP205 4.4 99.4 1.0 ND1 B:HIS18 4.5 116.3 1.0 CG B:HIS18 4.5 115.9 1.0 O B:THR189 4.6 114.6 1.0 CB B:ASN203 4.6 117.4 1.0 NZ B:LYS73 4.6 115.9 1.0 O B:GLY17 4.9 117.3 1.0 CA B:ASP188 4.9 92.8 1.0

A.Schedlbauer, X.Han, W.Van Bakel, T.Kaminishi, B.Ochoa-Lizarralde, I.Iturrioz, R.Capuni, R.Parry, R.Zegarra, D.Gil-Carton, J.P.Lopez-Alonso, K.Barragan Sanz, L.Brandi, C.O.Gualerzi, P.Fucini, S.R.Connell. A Binding Site For the Antibiotic GE81112 in the Ribosomal Mrna Channel. Biorxiv 2024.
ISSN: ISSN 2692-8205
PubMed: 39386670
DOI: 10.1101/2024.09.26.614503