Zinc in PDB 9h9i: Complex 2 (Head) 30S-IF1-IF3-Trna-GE81112

The structure of Complex 2 (Head) 30S-IF1-IF3-Trna-GE81112 also contains other interesting chemical elements:

Magnesium

(Mg)

49 atoms

The binding sites of Zinc atom in the Complex 2 (Head) 30S-IF1-IF3-Trna-GE81112 (pdb code 9h9i). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Complex 2 (Head) 30S-IF1-IF3-Trna-GE81112, PDB code: 9h9i:

Zinc binding site 1 out of 1 in the Complex 2 (Head) 30S-IF1-IF3-Trna-GE81112


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Complex 2 (Head) 30S-IF1-IF3-Trna-GE81112 within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn301 b:140.6 occ:1.00 OD2 B:ASP205 1.9 103.8 1.0 OD1 B:ASP204 2.0 101.4 1.0 NE2 B:HIS18 2.1 117.0 1.0 OD2 B:ASP188 2.5 94.9 1.0 CG B:ASP204 2.6 97.0 1.0 CG B:ASP205 2.8 100.7 1.0 OD2 B:ASP204 3.0 92.2 1.0 CE1 B:HIS18 3.1 116.5 1.0 CD2 B:HIS18 3.1 116.4 1.0 OD1 B:ASP205 3.2 102.8 1.0 N B:ASP204 3.2 101.4 1.0 ND2 B:ASN203 3.3 118.5 1.0 CG B:ASP188 3.3 94.1 1.0 CB B:ASP188 3.6 92.1 1.0 CB B:ASP204 3.7 94.1 1.0 N B:ASP205 3.8 96.5 1.0 CA B:ASP204 3.8 95.0 1.0 CG B:ASN203 3.9 118.3 1.0 C B:ASP204 4.0 94.6 1.0 CB B:ASP205 4.1 96.5 1.0 ND1 B:HIS18 4.2 116.3 1.0 C B:ASN203 4.3 115.3 1.0 CG B:HIS18 4.3 115.9 1.0 OD1 B:ASN203 4.3 118.5 1.0 OD1 B:ASP188 4.4 94.0 1.0 CA B:ASN203 4.4 116.8 1.0 CA B:ASP205 4.5 99.4 1.0 NZ B:LYS73 4.6 115.9 1.0 CB B:ASN203 4.8 117.4 1.0 O B:ASP204 4.8 94.5 1.0 O B:THR189 5.0 114.6 1.0

A.Schedlbauer, X.Han, W.Van Bakel, T.Kaminishi, B.Ochoa-Lizarralde, I.Iturrioz, R.Capuni, R.Parry, R.Zegarra, D.Gil-Carton, J.P.Lopez-Alonso, K.Barragan Sanz, L.Brandi, C.O.Gualerzi, P.Fucini, S.R.Connell. A Binding Site For the Antibiotic GE81112 in the Ribosomal Mrna Channel. Biorxiv 2024.
ISSN: ISSN 2692-8205
PubMed: 39386670
DOI: 10.1101/2024.09.26.614503