Zinc in PDB 9h91: Cryo-Em Structure of the Vibrio Natrigens 50S Ribosomal Subunit in Complex with the Proline-Rich Antimicrobial Peptide BAC5(1-17).

The binding sites of Zinc atom in the Cryo-Em Structure of the Vibrio Natrigens 50S Ribosomal Subunit in Complex with the Proline-Rich Antimicrobial Peptide BAC5(1-17). (pdb code 9h91). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Cryo-Em Structure of the Vibrio Natrigens 50S Ribosomal Subunit in Complex with the Proline-Rich Antimicrobial Peptide BAC5(1-17)., PDB code: 9h91:

Zinc binding site 1 out of 1 in the Cryo-Em Structure of the Vibrio Natrigens 50S Ribosomal Subunit in Complex with the Proline-Rich Antimicrobial Peptide BAC5(1-17).


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of the Vibrio Natrigens 50S Ribosomal Subunit in Complex with the Proline-Rich Antimicrobial Peptide BAC5(1-17). within 5.0Å range: probe atom residue distance (Å) B Occ 4:Zn101 b:87.1 occ:1.00 ND1 4:HIS32 2.1 87.2 1.0 SG 4:CYS11 2.3 103.2 1.0 SG 4:CYS27 2.3 89.9 1.0 SG 4:CYS14 2.3 93.1 1.0 CG 4:HIS32 3.1 88.3 1.0 CE1 4:HIS32 3.1 91.6 1.0 CB 4:CYS11 3.3 103.4 1.0 CB 4:HIS32 3.3 71.6 1.0 N 4:CYS14 3.4 85.2 1.0 CB 4:CYS27 3.4 81.2 1.0 CB 4:CYS14 3.5 82.0 1.0 N 4:CYS11 3.6 95.4 1.0 CA 4:CYS14 3.7 83.8 1.0 CA 4:CYS11 3.9 104.2 1.0 C 4:ASN13 4.1 86.8 1.0 NE2 4:HIS32 4.2 82.3 1.0 CD2 4:HIS32 4.2 87.6 1.0 C 4:CYS11 4.2 91.5 1.0 O 4:CYS11 4.3 120.5 1.0 CG 4:GLU29 4.3 137.7 1.0 CB 4:GLU29 4.5 113.0 1.0 N 4:ASN13 4.5 100.5 1.0 C 4:ILE10 4.5 88.5 1.0 CA 4:ASN13 4.6 110.3 1.0 O 4:ASN13 4.7 116.4 1.0 CB 4:ASN13 4.7 116.7 1.0 CB 4:ILE10 4.8 85.2 1.0 CA 4:CYS27 4.8 84.4 1.0 N 4:ILE10 4.8 87.4 1.0 CA 4:HIS32 4.9 71.7 1.0 CA 4:ILE10 5.0 75.6 1.0 N 4:ARG12 5.0 105.3 1.0

K.Raulf, T.O.Koller, B.Beckert, A.Lepak, M.Morici, M.Mardirossian, M.Scocchi, G.Bange, D.N.Wilson. The Structure of the Vibrio Natriegens 70S Ribosome in Complex with the Proline-Rich Antimicrobial Peptide BAC5(1-17). Nucleic Acids Res. V. 53 2025.
ISSN: ESSN 1362-4962
PubMed: 40331629
DOI: 10.1093/NAR/GKAF324