Zinc in PDB 9h2j: Acmnpv Apical Cap - C14 Anchor Complex Only

All present enzymatic activity of Acmnpv Apical Cap - C14 Anchor Complex Only:
3.1.3.48;

The binding sites of Zinc atom in the Acmnpv Apical Cap - C14 Anchor Complex Only (pdb code 9h2j). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Acmnpv Apical Cap - C14 Anchor Complex Only, PDB code: 9h2j:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in the Acmnpv Apical Cap - C14 Anchor Complex Only


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Acmnpv Apical Cap - C14 Anchor Complex Only within 5.0Å range: probe atom residue distance (Å) B Occ F:Zn401 b:431.3 occ:1.00 CE1 F:HIS52 2.2 374.4 1.0 O F:PHE20 2.3 380.1 1.0 SG F:CYS18 2.3 382.3 1.0 SG F:CYS36 2.3 375.1 1.0 ND1 F:HIS52 2.3 374.4 1.0 CB F:CYS36 2.4 375.1 1.0 CB F:CYS18 2.9 382.3 1.0 CA F:CYS36 3.3 375.1 1.0 SG F:CYS49 3.4 372.4 1.0 NE2 F:HIS52 3.4 374.4 1.0 C F:PHE20 3.5 380.1 1.0 CG F:HIS52 3.6 374.4 1.0 CB F:CYS49 3.7 372.4 1.0 CA F:ALA21 4.0 377.4 1.0 CD2 F:HIS52 4.0 374.4 1.0 N F:SER37 4.1 368.3 1.0 N F:ALA21 4.2 377.4 1.0 CA F:CYS18 4.2 382.3 1.0 C F:CYS36 4.3 375.1 1.0 O F:CYS18 4.3 382.3 1.0 CB F:ALA40 4.3 375.0 1.0 N F:CYS36 4.4 375.1 1.0 C F:CYS18 4.4 382.3 1.0 N F:CYS49 4.4 372.4 1.0 OD1 F:ASN16 4.4 368.3 1.0 O F:ALA21 4.6 377.4 1.0 CB F:HIS52 4.6 374.4 1.0 CA F:PHE20 4.6 380.1 1.0 N F:PHE20 4.6 380.1 1.0 CA F:CYS49 4.7 372.4 1.0 C F:ALA21 4.8 377.4 1.0 ND2 F:ASN16 4.9 368.3 1.0 CB F:ALA21 5.0 377.4 1.0

Zinc binding site 2 out of 3 in the Acmnpv Apical Cap - C14 Anchor Complex Only


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Acmnpv Apical Cap - C14 Anchor Complex Only within 5.0Å range: probe atom residue distance (Å) B Occ G:Zn401 b:280.4 occ:1.00 CD2 G:HIS52 1.7 250.5 1.0 CG G:HIS52 1.8 250.5 1.0 NE2 G:HIS52 2.2 250.5 1.0 SG G:CYS18 2.3 242.8 1.0 ND1 G:HIS52 2.3 250.5 1.0 SG G:CYS36 2.3 250.9 1.0 CE1 G:HIS52 2.5 250.5 1.0 CB G:HIS52 2.7 250.5 1.0 O G:PHE20 2.7 253.7 1.0 CB G:CYS49 3.2 238.1 1.0 C G:PHE20 3.4 253.7 1.0 CB G:PHE20 3.5 253.7 1.0 CB G:CYS36 3.6 250.9 1.0 CB G:CYS18 3.8 242.8 1.0 CA G:PHE20 4.0 253.7 1.0 CA G:HIS52 4.0 250.5 1.0 N G:CYS49 4.0 238.1 1.0 CA G:CYS36 4.0 250.9 1.0 N G:HIS52 4.0 250.5 1.0 CA G:CYS49 4.1 238.1 1.0 SG G:CYS49 4.1 238.1 1.0 O G:CYS49 4.2 238.1 1.0 N G:ALA21 4.4 257.0 1.0 N G:PHE20 4.4 253.7 1.0 C G:CYS49 4.5 238.1 1.0 N G:CYS36 4.6 250.9 1.0 CG G:PHE20 4.8 253.7 1.0 CG1 G:ILE48 4.8 238.7 1.0

Zinc binding site 3 out of 3 in the Acmnpv Apical Cap - C14 Anchor Complex Only


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Acmnpv Apical Cap - C14 Anchor Complex Only within 5.0Å range: probe atom residue distance (Å) B Occ M:Zn401 b:345.7 occ:1.00 CD2 M:HIS52 1.9 292.1 1.0 CG M:HIS52 1.9 292.1 1.0 NE2 M:HIS52 2.1 292.1 1.0 ND1 M:HIS52 2.2 292.1 1.0 CE1 M:HIS52 2.3 292.1 1.0 SG M:CYS18 2.3 299.3 1.0 SG M:CYS49 2.3 292.9 1.0 SG M:CYS36 2.3 297.9 1.0 CB M:HIS52 2.9 292.1 1.0 CB M:CYS36 3.1 297.9 1.0 CB M:CYS18 3.4 299.3 1.0 CB M:CYS49 3.5 292.9 1.0 CA M:CYS36 3.5 297.9 1.0 N M:HIS52 3.8 292.1 1.0 CA M:HIS52 3.9 292.1 1.0 N M:CYS49 3.9 292.9 1.0 O M:ILE19 4.1 292.0 1.0 CA M:CYS49 4.2 292.9 1.0 N M:CYS36 4.4 297.9 1.0 O M:CYS49 4.5 292.9 1.0 C M:CYS36 4.6 297.9 1.0 N M:SER37 4.6 285.9 1.0 C M:CYS49 4.7 292.9 1.0 CA M:CYS18 4.8 299.3 1.0 OG M:SER34 4.8 309.6 1.0 N M:ALA21 4.9 296.4 1.0 CG1 M:ILE48 4.9 292.0 1.0 C M:ASN51 4.9 283.0 1.0 CB M:ALA21 4.9 296.4 1.0 CB M:ASN51 4.9 283.0 1.0

G.Effantin, E.Kandiah, M.Pelosse. Structure of Acmnpv Nucleocapsid Reveals Dna Portal Organization and Packaging Apparatus of Circular Dsdna Baculovirus. Nat Commun V. 16 4844 2025.
ISSN: ESSN 2041-1723
PubMed: 40413174
DOI: 10.1038/S41467-025-60152-2