Atomistry » Zinc » PDB 9gky-9hdq » 9h2b
Atomistry »
  Zinc »
    PDB 9gky-9hdq »
      9h2b »

Zinc in PDB 9h2b: Acmnpv Basal Cap - C14 Anchor Complex Only

Zinc Binding Sites:

The binding sites of Zinc atom in the Acmnpv Basal Cap - C14 Anchor Complex Only (pdb code 9h2b). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Acmnpv Basal Cap - C14 Anchor Complex Only, PDB code: 9h2b:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 9h2b

Go back to Zinc Binding Sites List in 9h2b
Zinc binding site 1 out of 4 in the Acmnpv Basal Cap - C14 Anchor Complex Only


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Acmnpv Basal Cap - C14 Anchor Complex Only within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Zn401

b:341.4
occ:1.00
NE2 G:HIS52 2.1 267.5 1.0
SG G:CYS36 2.3 290.4 1.0
SG G:CYS18 2.3 279.9 1.0
SG G:CYS49 2.3 272.6 1.0
CB G:CYS36 2.5 290.4 1.0
CD2 G:HIS52 2.8 267.5 1.0
CB G:CYS49 3.0 272.6 1.0
CA G:CYS36 3.0 290.4 1.0
CE1 G:HIS52 3.1 267.5 1.0
CB G:CYS18 3.5 279.9 1.0
C G:CYS36 3.9 290.4 1.0
CG G:HIS52 3.9 267.5 1.0
N G:SER37 3.9 270.0 1.0
ND1 G:HIS52 4.0 267.5 1.0
ND2 G:ASN16 4.2 269.4 1.0
CB G:ALA40 4.2 274.5 1.0
N G:CYS36 4.2 290.4 1.0
CA G:CYS49 4.3 272.6 1.0
OD1 G:ASN16 4.3 269.4 1.0
O G:PRO35 4.4 289.9 1.0
N G:CYS49 4.4 272.6 1.0
CB G:ALA21 4.4 284.1 1.0
N G:ALA21 4.5 284.1 1.0
CA G:ALA21 4.6 284.1 1.0
O G:SER37 4.6 270.0 1.0
CG G:ASN16 4.7 269.4 1.0
C G:PRO35 4.7 289.9 1.0
CA G:CYS18 4.9 279.9 1.0
O G:CYS36 4.9 290.4 1.0

Zinc binding site 2 out of 4 in 9h2b

Go back to Zinc Binding Sites List in 9h2b
Zinc binding site 2 out of 4 in the Acmnpv Basal Cap - C14 Anchor Complex Only


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Acmnpv Basal Cap - C14 Anchor Complex Only within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Zn401

b:277.5
occ:1.00
NE2 H:HIS52 2.0 205.5 1.0
SG H:CYS49 2.3 204.3 1.0
SG H:CYS18 2.3 208.3 1.0
SG H:CYS36 2.3 216.4 1.0
CD2 H:HIS52 2.6 205.5 1.0
CB H:CYS36 2.9 216.4 1.0
CB H:CYS49 3.0 204.3 1.0
CE1 H:HIS52 3.1 205.5 1.0
CA H:CYS36 3.2 216.4 1.0
CB H:CYS18 3.5 208.3 1.0
CG H:HIS52 3.8 205.5 1.0
ND1 H:HIS52 3.9 205.5 1.0
N H:SER37 4.0 199.6 1.0
C H:CYS36 4.1 216.4 1.0
CB H:ALA40 4.2 201.1 1.0
O H:PRO35 4.3 225.2 1.0
CA H:CYS49 4.3 204.3 1.0
N H:CYS36 4.4 216.4 1.0
N H:CYS49 4.4 204.3 1.0
CB H:ALA21 4.5 211.6 1.0
N H:ALA21 4.6 211.6 1.0
O H:SER37 4.7 199.6 1.0
CA H:ALA21 4.7 211.6 1.0
C H:PRO35 4.7 225.2 1.0
OD1 H:ASN16 4.8 203.8 1.0
ND2 H:ASN16 4.8 203.8 1.0
CA H:CYS18 4.9 208.3 1.0

Zinc binding site 3 out of 4 in 9h2b

Go back to Zinc Binding Sites List in 9h2b
Zinc binding site 3 out of 4 in the Acmnpv Basal Cap - C14 Anchor Complex Only


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Acmnpv Basal Cap - C14 Anchor Complex Only within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Zn401

b:367.2
occ:1.00
NE2 M:HIS52 2.1 288.1 1.0
SG M:CYS18 2.3 291.2 1.0
SG M:CYS49 2.3 290.6 1.0
SG M:CYS36 2.3 307.7 1.0
CD2 M:HIS52 2.4 288.1 1.0
CB M:CYS36 2.7 307.7 1.0
CA M:CYS36 2.7 307.7 1.0
CB M:CYS18 3.2 291.2 1.0
CE1 M:HIS52 3.2 288.1 1.0
N M:SER37 3.4 290.0 1.0
C M:CYS36 3.5 307.7 1.0
CG M:HIS52 3.5 288.1 1.0
CB M:CYS49 3.6 290.6 1.0
ND1 M:HIS52 3.9 288.1 1.0
O M:PRO35 3.9 305.0 1.0
N M:CYS36 3.9 307.7 1.0
C M:PRO35 4.4 305.0 1.0
O M:SER37 4.4 290.0 1.0
CB M:ALA40 4.5 280.5 1.0
O M:CYS36 4.5 307.7 1.0
CA M:CYS18 4.6 291.2 1.0
CB M:ALA21 4.6 294.5 1.0
CA M:SER37 4.6 290.0 1.0
CA M:CYS49 4.7 290.6 1.0
CB M:HIS52 4.7 288.1 1.0
N M:CYS49 4.7 290.6 1.0
N M:HIS52 4.8 288.1 1.0
CB M:ASN51 5.0 281.8 1.0
C M:SER37 5.0 290.0 1.0

Zinc binding site 4 out of 4 in 9h2b

Go back to Zinc Binding Sites List in 9h2b
Zinc binding site 4 out of 4 in the Acmnpv Basal Cap - C14 Anchor Complex Only


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Acmnpv Basal Cap - C14 Anchor Complex Only within 5.0Å range:
probe atom residue distance (Å) B Occ
N:Zn401

b:274.7
occ:1.00
CD2 N:HIS52 1.5 216.1 1.0
NE2 N:HIS52 2.1 216.1 1.0
SG N:CYS36 2.3 225.7 1.0
SG N:CYS49 2.3 221.8 1.0
SG N:CYS18 2.3 222.4 1.0
CG N:HIS52 2.5 216.1 1.0
CE1 N:HIS52 3.0 216.1 1.0
ND1 N:HIS52 3.2 216.1 1.0
CB N:HIS52 3.4 216.1 1.0
CB N:CYS36 3.5 225.7 1.0
CB N:CYS49 3.6 221.8 1.0
N N:HIS52 3.7 216.1 1.0
CB N:CYS18 3.7 222.4 1.0
N N:CYS49 3.9 221.8 1.0
O N:CYS49 4.0 221.8 1.0
CA N:CYS49 4.0 221.8 1.0
CA N:CYS18 4.1 222.4 1.0
C N:CYS49 4.1 221.8 1.0
CA N:HIS52 4.1 216.1 1.0
N N:SER37 4.2 211.8 1.0
OG N:SER37 4.2 211.8 1.0
O N:ILE19 4.3 211.5 1.0
C N:CYS18 4.6 222.4 1.0
CA N:CYS36 4.6 225.7 1.0
O N:SER37 4.7 211.8 1.0
N N:ASN51 4.7 205.8 1.0
C N:CYS36 4.7 225.7 1.0
C N:ASN51 4.7 205.8 1.0
N N:ASN50 4.8 211.3 1.0
CB N:ASN51 4.9 205.8 1.0
O N:CYS18 5.0 222.4 1.0
CB N:ALA40 5.0 209.7 1.0

Reference:

G.Effantin, E.Kandiah, M.Pelosse. Structure of Acmnpv Nucleocapsid Reveals Dna Portal Organization and Packaging Apparatus of Circular Dsdna Baculovirus. Nat Commun V. 16 4844 2025.
ISSN: ESSN 2041-1723
PubMed: 40413174
DOI: 10.1038/S41467-025-60152-2
Page generated: Fri Aug 22 18:01:16 2025

Last articles

Mn in 9LJU
Mn in 9LJW
Mn in 9LJS
Mn in 9LJR
Mn in 9LJT
Mn in 9LJV
Mg in 9UA2
Mg in 9R96
Mg in 9VM1
Mg in 9P01
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy