Zinc in PDB 9h1s: Acmnpv Helical Nucleocapsid

The binding sites of Zinc atom in the Acmnpv Helical Nucleocapsid (pdb code 9h1s). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Acmnpv Helical Nucleocapsid, PDB code: 9h1s:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Acmnpv Helical Nucleocapsid


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Acmnpv Helical Nucleocapsid within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:275.7 occ:1.00 CD2 A:HIS52 1.5 147.6 1.0 SG A:CYS49 1.7 159.5 1.0 NE2 A:HIS52 1.7 147.6 1.0 SG A:CYS18 1.8 172.2 1.0 SG A:CYS36 2.1 208.2 1.0 CG A:HIS52 2.6 147.6 1.0 CE1 A:HIS52 2.7 147.6 1.0 CB A:CYS18 2.9 172.2 1.0 CB A:CYS49 3.0 159.5 1.0 ND1 A:HIS52 3.1 147.6 1.0 CB A:CYS36 3.4 208.2 1.0 N A:CYS49 3.6 133.4 1.0 CB A:HIS52 3.7 147.6 1.0 CA A:CYS49 3.8 133.7 1.0 O A:CYS49 4.2 137.8 1.0 CA A:CYS36 4.2 174.7 1.0 C A:CYS49 4.3 135.0 1.0 CA A:CYS18 4.3 143.8 1.0 N A:HIS52 4.3 130.2 1.0 O A:PRO35 4.4 166.3 1.0 N A:ALA21 4.6 147.2 1.0 CA A:HIS52 4.6 134.3 1.0 C A:CYS18 4.7 138.5 1.0 C A:ILE48 4.8 121.5 1.0 CB A:ALA21 4.8 145.4 1.0 O A:CYS18 4.8 139.4 1.0

Zinc binding site 2 out of 2 in the Acmnpv Helical Nucleocapsid


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Acmnpv Helical Nucleocapsid within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn401 b:232.7 occ:1.00 CD2 B:HIS52 1.5 152.7 1.0 NE2 B:HIS52 1.7 152.7 1.0 SG B:CYS18 1.7 179.2 1.0 SG B:CYS49 1.8 166.0 1.0 SG B:CYS36 2.0 210.1 1.0 CG B:HIS52 2.5 152.7 1.0 CE1 B:HIS52 2.8 152.7 1.0 ND1 B:HIS52 3.1 152.7 1.0 CB B:CYS49 3.2 166.0 1.0 CB B:CYS18 3.3 179.2 1.0 CB B:CYS36 3.3 210.1 1.0 CB B:HIS52 3.6 152.7 1.0 O B:ILE19 3.7 140.9 1.0 N B:CYS49 3.8 138.9 1.0 CA B:CYS36 3.9 176.9 1.0 CA B:CYS49 4.0 141.8 1.0 O B:CYS49 4.4 141.8 1.0 CA B:CYS18 4.5 153.8 1.0 CB B:PHE20 4.5 139.8 1.0 C B:CYS49 4.5 142.8 1.0 N B:HIS52 4.6 134.5 1.0 N B:ALA21 4.6 135.8 1.0 N B:CYS36 4.6 176.0 1.0 C B:CYS18 4.6 153.4 1.0 C B:ILE19 4.7 130.3 1.0 CA B:HIS52 4.8 138.2 1.0 C B:PHE20 4.8 142.3 1.0 O B:CYS18 4.8 152.8 1.0 OG B:SER34 5.0 182.7 1.0 C B:ILE48 5.0 120.2 1.0

G.Effantin, E.Kandiah, M.Pelosse. Structure of Acmnpv Nucleocapsid Reveals Dna Portal Organization and Packaging Apparatus of Circular Dsdna Baculovirus. Nat Commun V. 16 4844 2025.
ISSN: ESSN 2041-1723
PubMed: 40413174
DOI: 10.1038/S41467-025-60152-2