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Zinc in PDB 8y7w: Thymidine Kinase From Staphylococcus Aureus(Col Strain)

Enzymatic activity of Thymidine Kinase From Staphylococcus Aureus(Col Strain)

All present enzymatic activity of Thymidine Kinase From Staphylococcus Aureus(Col Strain):
2.7.1.21;

Protein crystallography data

The structure of Thymidine Kinase From Staphylococcus Aureus(Col Strain), PDB code: 8y7w was solved by A.Ashraf, R.K.Pal, M.I.Hassan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.14 / 2.30
Space group P 42 2 2
Cell size a, b, c (Å), α, β, γ (°) 71.736, 71.736, 95.59, 90, 90, 90
R / Rfree (%) 19.3 / 22.7

Other elements in 8y7w:

The structure of Thymidine Kinase From Staphylococcus Aureus(Col Strain) also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Thymidine Kinase From Staphylococcus Aureus(Col Strain) (pdb code 8y7w). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Thymidine Kinase From Staphylococcus Aureus(Col Strain), PDB code: 8y7w:

Zinc binding site 1 out of 1 in 8y7w

Go back to Zinc Binding Sites List in 8y7w
Zinc binding site 1 out of 1 in the Thymidine Kinase From Staphylococcus Aureus(Col Strain)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Thymidine Kinase From Staphylococcus Aureus(Col Strain) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn301

b:50.5
occ:1.00
ND1 A:HIS186 2.0 66.0 1.0
SG A:CYS183 2.2 49.9 1.0
SG A:CYS148 2.3 50.6 1.0
SG A:CYS145 2.4 46.0 1.0
CE1 A:HIS186 2.8 66.0 1.0
CG A:HIS186 3.1 60.0 1.0
CB A:CYS145 3.3 49.1 1.0
CB A:CYS183 3.3 45.2 1.0
CB A:CYS148 3.4 54.0 1.0
CB A:HIS186 3.6 56.4 1.0
N A:CYS148 3.8 53.7 1.0
N A:CYS183 4.0 37.8 1.0
NE2 A:HIS186 4.0 59.8 1.0
CA A:CYS148 4.2 52.4 1.0
CD2 A:HIS186 4.2 60.6 1.0
CA A:CYS183 4.2 45.1 1.0
CB A:VAL147 4.4 59.6 1.0
N A:HIS186 4.7 57.4 1.0
CA A:CYS145 4.7 44.9 1.0
CA A:HIS186 4.8 55.3 1.0
C A:VAL147 4.8 59.5 1.0
C A:CYS183 4.9 45.8 1.0
O A:CYS183 4.9 48.6 1.0
N A:GLY149 4.9 53.5 1.0
C A:CYS148 4.9 54.0 1.0
CG1 A:VAL147 5.0 60.9 1.0

Reference:

A.Ashraf, R.K.Pal, M.I.Hassan. Thymidine Kinase From Staphylococcus Aureus(Col Strain) To Be Published.
Page generated: Tue Feb 25 12:11:56 2025

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