Zinc in PDB 8vec: Deep Mutational Scanning of Sars-Cov-2 Plpro

All present enzymatic activity of Deep Mutational Scanning of Sars-Cov-2 Plpro:
3.4.19.12;

The structure of Deep Mutational Scanning of Sars-Cov-2 Plpro, PDB code: 8vec was solved by X.Wu, J.V.Nguyen, M.E.Call, M.J.Call, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.50 / 2.00
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	57.958, 85.47, 82.88, 90, 90, 90
R / Rfree (%)	17.4 / 21.7

The binding sites of Zinc atom in the Deep Mutational Scanning of Sars-Cov-2 Plpro (pdb code 8vec). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Deep Mutational Scanning of Sars-Cov-2 Plpro, PDB code: 8vec:

Zinc binding site 1 out of 1 in the Deep Mutational Scanning of Sars-Cov-2 Plpro


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Deep Mutational Scanning of Sars-Cov-2 Plpro within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:75.7 occ:1.00 SG A:CYS192 2.3 52.8 1.0 SG A:CYS226 2.3 93.8 1.0 SG A:CYS189 2.3 66.6 1.0 SG A:CYS224 2.4 64.3 1.0 CB A:CYS189 3.3 53.5 1.0 CB A:CYS226 3.3 80.8 1.0 CB A:CYS192 3.5 57.7 1.0 CB A:CYS224 3.8 68.4 1.0 N A:CYS192 3.9 63.8 1.0 N A:CYS226 4.1 81.4 1.0 CB A:THR191 4.2 61.2 1.0 CA A:CYS226 4.3 79.5 1.0 CA A:CYS192 4.4 53.3 1.0 CA A:CYS189 4.7 42.4 1.0 OG1 A:THR191 4.9 71.0 1.0 C A:THR191 4.9 64.9 1.0 CG2 A:THR191 4.9 62.8 1.0 OG1 A:THR225 4.9 93.2 1.0 N A:THR225 4.9 73.8 1.0 CA A:THR191 4.9 44.5 1.0 N A:THR191 4.9 52.3 1.0 C A:CYS224 5.0 67.1 1.0

X.Wu, M.Go, J.V.Nguyen, N.W.Kuchel, B.G.C.Lu, K.N.Lowes, D.J.Calleja, J.P.Mitchell, G.Lessene, D.Komander, M.E.Call, M.J.Call. Mutational Profiling of Sars-Cov-2 Plpro in Human Cells Reveals Requirements For Function, Structure, and Drug Escape Biorxiv 2024.
ISSN: ISSN 2692-8205
DOI: 10.1101/2024.03.11.584210