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Zinc in PDB 8ukq: Rna Polymerase II Elongation Complex with Fapy-Dg Lesion in Apo State
Enzymatic activity of Rna Polymerase II Elongation Complex with Fapy-Dg Lesion in Apo State
All present enzymatic activity of Rna Polymerase II Elongation Complex with Fapy-Dg Lesion in Apo State:
2.7.7.6;
2.7.7.6;
Protein crystallography data
The structure of Rna Polymerase II Elongation Complex with Fapy-Dg Lesion in Apo State, PDB code: 8ukq
was solved by
P.Hou,
J.Oh,
D.Wang,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 48.44 / 3.50 |
| Space group | C 1 2 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 161.54, 223.485, 191.472, 90, 98.38, 90 |
| R / Rfree (%) | 26.8 / 30.2 |
Other elements in 8ukq:
The structure of Rna Polymerase II Elongation Complex with Fapy-Dg Lesion in Apo State also contains other interesting chemical elements:
| Magnesium | (Mg) | 1 atom |
Zinc Binding Sites:
The binding sites of Zinc atom in the Rna Polymerase II Elongation Complex with Fapy-Dg Lesion in Apo State
(pdb code 8ukq). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 8 binding sites of Zinc where determined in the Rna Polymerase II Elongation Complex with Fapy-Dg Lesion in Apo State, PDB code: 8ukq:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8;
In total 8 binding sites of Zinc where determined in the Rna Polymerase II Elongation Complex with Fapy-Dg Lesion in Apo State, PDB code: 8ukq:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8;
Zinc binding site 1 out of 8 in 8ukq
Go back to
Zinc Binding Sites List in 8ukq
Zinc binding site 1 out
of 8 in the Rna Polymerase II Elongation Complex with Fapy-Dg Lesion in Apo State
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Rna Polymerase II Elongation Complex with Fapy-Dg Lesion in Apo State within 5.0Å range:
|
Zinc binding site 2 out of 8 in 8ukq
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Zinc Binding Sites List in 8ukq
Zinc binding site 2 out
of 8 in the Rna Polymerase II Elongation Complex with Fapy-Dg Lesion in Apo State
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Rna Polymerase II Elongation Complex with Fapy-Dg Lesion in Apo State within 5.0Å range:
|
Zinc binding site 3 out of 8 in 8ukq
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Zinc Binding Sites List in 8ukq
Zinc binding site 3 out
of 8 in the Rna Polymerase II Elongation Complex with Fapy-Dg Lesion in Apo State
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Zinc with other atoms in the Zn binding
site number 3 of Rna Polymerase II Elongation Complex with Fapy-Dg Lesion in Apo State within 5.0Å range:
|
Zinc binding site 4 out of 8 in 8ukq
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Zinc Binding Sites List in 8ukq
Zinc binding site 4 out
of 8 in the Rna Polymerase II Elongation Complex with Fapy-Dg Lesion in Apo State
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Zinc with other atoms in the Zn binding
site number 4 of Rna Polymerase II Elongation Complex with Fapy-Dg Lesion in Apo State within 5.0Å range:
|
Zinc binding site 5 out of 8 in 8ukq
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Zinc Binding Sites List in 8ukq
Zinc binding site 5 out
of 8 in the Rna Polymerase II Elongation Complex with Fapy-Dg Lesion in Apo State
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Zinc with other atoms in the Zn binding
site number 5 of Rna Polymerase II Elongation Complex with Fapy-Dg Lesion in Apo State within 5.0Å range:
|
Zinc binding site 6 out of 8 in 8ukq
Go back to
Zinc Binding Sites List in 8ukq
Zinc binding site 6 out
of 8 in the Rna Polymerase II Elongation Complex with Fapy-Dg Lesion in Apo State
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Zinc with other atoms in the Zn binding
site number 6 of Rna Polymerase II Elongation Complex with Fapy-Dg Lesion in Apo State within 5.0Å range:
|
Zinc binding site 7 out of 8 in 8ukq
Go back to
Zinc Binding Sites List in 8ukq
Zinc binding site 7 out
of 8 in the Rna Polymerase II Elongation Complex with Fapy-Dg Lesion in Apo State
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Zinc with other atoms in the Zn binding
site number 7 of Rna Polymerase II Elongation Complex with Fapy-Dg Lesion in Apo State within 5.0Å range:
|
Zinc binding site 8 out of 8 in 8ukq
Go back to
Zinc Binding Sites List in 8ukq
Zinc binding site 8 out
of 8 in the Rna Polymerase II Elongation Complex with Fapy-Dg Lesion in Apo State
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Zinc with other atoms in the Zn binding
site number 8 of Rna Polymerase II Elongation Complex with Fapy-Dg Lesion in Apo State within 5.0Å range:
|
Reference:
S.Gao,
P.Hou,
J.Oh,
D.Wang,
M.M.Greenberg.
Molecular Mechanism of Rna Polymerase II Transcriptional Mutagenesis By the Epimerizable Dna Lesion, Fapy·Dg. J.Am.Chem.Soc. V. 146 6274 2024.
ISSN: ESSN 1520-5126
PubMed: 38393762
DOI: 10.1021/JACS.3C14476
Page generated: Fri Aug 22 14:18:30 2025
ISSN: ESSN 1520-5126
PubMed: 38393762
DOI: 10.1021/JACS.3C14476
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