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Zinc in PDB 8tu8: Cryo-Em Structure of Apoferritin Collected By Serialem on Glacios at 2.1 Angstrom Resolution

Enzymatic activity of Cryo-Em Structure of Apoferritin Collected By Serialem on Glacios at 2.1 Angstrom Resolution

All present enzymatic activity of Cryo-Em Structure of Apoferritin Collected By Serialem on Glacios at 2.1 Angstrom Resolution:
1.16.3.1;

Other elements in 8tu8:

The structure of Cryo-Em Structure of Apoferritin Collected By Serialem on Glacios at 2.1 Angstrom Resolution also contains other interesting chemical elements:

Iron (Fe) 6 atoms

Zinc Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 24;

Binding sites:

The binding sites of Zinc atom in the Cryo-Em Structure of Apoferritin Collected By Serialem on Glacios at 2.1 Angstrom Resolution (pdb code 8tu8). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 24 binding sites of Zinc where determined in the Cryo-Em Structure of Apoferritin Collected By Serialem on Glacios at 2.1 Angstrom Resolution, PDB code: 8tu8:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Zinc binding site 1 out of 24 in 8tu8

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Zinc binding site 1 out of 24 in the Cryo-Em Structure of Apoferritin Collected By Serialem on Glacios at 2.1 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Apoferritin Collected By Serialem on Glacios at 2.1 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn202

b:48.3
occ:1.00
OE1 A:GLU27 2.1 25.8 1.0
ND1 A:HIS65 2.3 26.6 1.0
OE1 A:GLU62 2.8 25.9 1.0
CD A:GLU27 3.0 25.8 1.0
HB3 A:HIS65 3.0 26.6 1.0
CG A:HIS65 3.1 26.6 1.0
OE2 A:GLU27 3.2 25.8 1.0
CE1 A:HIS65 3.2 26.6 1.0
OE2 A:GLU62 3.2 25.9 1.0
HB2 A:HIS65 3.3 26.6 1.0
CB A:HIS65 3.3 26.6 1.0
HD2 A:TYR137 3.4 26.5 1.0
CD A:GLU62 3.4 25.9 1.0
OE1 A:GLN141 3.4 26.2 1.0
HG11 A:VAL110 3.4 25.5 1.0
HE1 A:HIS65 3.5 26.6 1.0
OE1 A:GLU140 3.5 26.9 1.0
HE2 A:TYR137 3.9 26.5 1.0
HD11 A:LEU114 4.0 26.0 1.0
HG12 A:VAL110 4.0 25.5 1.0
OE2 A:GLU140 4.1 26.9 1.0
HA A:GLU62 4.1 25.9 1.0
CD A:GLU140 4.1 26.9 1.0
CD2 A:TYR137 4.1 26.5 1.0
CD2 A:HIS65 4.1 26.6 1.0
CG1 A:VAL110 4.1 25.5 1.0
NE2 A:HIS65 4.2 26.6 1.0
HB3 A:GLU27 4.2 25.8 1.0
CD A:GLN141 4.4 26.2 1.0
CE2 A:TYR137 4.4 26.5 1.0
CG A:GLU27 4.4 25.8 1.0
HG13 A:VAL110 4.5 25.5 1.0
HG2 A:GLN141 4.5 26.2 1.0
HD12 A:LEU114 4.8 26.0 1.0
CB A:GLU27 4.8 25.8 1.0
CA A:HIS65 4.8 26.6 1.0
HG3 A:GLU27 4.8 25.8 1.0
CD1 A:LEU114 4.8 26.0 1.0
CG A:GLU62 4.9 25.9 1.0
HD2 A:HIS65 4.9 26.6 1.0
HG2 A:GLU27 4.9 25.8 1.0
HE2 A:HIS65 4.9 26.6 1.0
HA A:GLU27 5.0 25.8 1.0

Zinc binding site 2 out of 24 in 8tu8

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Zinc binding site 2 out of 24 in the Cryo-Em Structure of Apoferritin Collected By Serialem on Glacios at 2.1 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of Apoferritin Collected By Serialem on Glacios at 2.1 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn202

b:46.9
occ:1.00
OE1 B:GLU27 2.1 25.9 1.0
ND1 B:HIS65 2.3 26.5 1.0
OE2 B:GLU62 2.8 25.9 1.0
CD B:GLU27 3.0 25.9 1.0
HB3 B:HIS65 3.0 26.5 1.0
HE21 B:GLN141 3.0 26.3 1.0
CG B:HIS65 3.1 26.5 1.0
OE2 B:GLU27 3.2 25.9 1.0
CE1 B:HIS65 3.2 26.5 1.0
OE1 B:GLU62 3.2 25.9 1.0
HB2 B:HIS65 3.3 26.5 1.0
CB B:HIS65 3.3 26.5 1.0
HE22 B:GLN141 3.3 26.3 1.0
NE2 B:GLN141 3.4 26.3 1.0
CD B:GLU62 3.4 25.9 1.0
HD2 B:TYR137 3.4 26.5 1.0
HG11 B:VAL110 3.4 25.6 1.0
HE1 B:HIS65 3.5 26.5 1.0
OE1 B:GLU140 3.6 26.9 1.0
HE2 B:TYR137 3.9 26.5 1.0
HD11 B:LEU114 4.0 26.0 1.0
OE2 B:GLU140 4.0 26.9 1.0
HG12 B:VAL110 4.0 25.6 1.0
HA B:GLU62 4.1 25.9 1.0
CD B:GLU140 4.1 26.9 1.0
CD2 B:HIS65 4.1 26.5 1.0
CD2 B:TYR137 4.1 26.5 1.0
CG1 B:VAL110 4.2 25.6 1.0
NE2 B:HIS65 4.2 26.5 1.0
HB3 B:GLU27 4.2 25.9 1.0
CG B:GLU27 4.4 25.9 1.0
CE2 B:TYR137 4.4 26.5 1.0
CD B:GLN141 4.4 26.3 1.0
HG13 B:VAL110 4.5 25.6 1.0
HG2 B:GLN141 4.5 26.3 1.0
HD12 B:LEU114 4.8 26.0 1.0
CB B:GLU27 4.8 25.9 1.0
CA B:HIS65 4.8 26.5 1.0
CD1 B:LEU114 4.8 26.0 1.0
HG3 B:GLU27 4.9 25.9 1.0
CG B:GLU62 4.9 25.9 1.0
HD2 B:HIS65 4.9 26.5 1.0
HG2 B:GLU27 4.9 25.9 1.0
HE2 B:HIS65 4.9 26.5 1.0
HA B:GLU27 5.0 25.9 1.0
CA B:GLU62 5.0 25.9 1.0

Zinc binding site 3 out of 24 in 8tu8

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Zinc binding site 3 out of 24 in the Cryo-Em Structure of Apoferritin Collected By Serialem on Glacios at 2.1 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Cryo-Em Structure of Apoferritin Collected By Serialem on Glacios at 2.1 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn202

b:46.4
occ:1.00
OE1 C:GLU27 2.2 25.9 1.0
ND1 C:HIS65 2.3 26.5 1.0
OE2 C:GLU27 2.8 25.9 1.0
CD C:GLU27 2.8 25.9 1.0
OE1 C:GLU62 2.8 25.8 1.0
HB3 C:HIS65 3.0 26.5 1.0
CG C:HIS65 3.1 26.5 1.0
CE1 C:HIS65 3.2 26.5 1.0
HB2 C:HIS65 3.3 26.5 1.0
CB C:HIS65 3.3 26.5 1.0
OE1 C:GLN141 3.4 26.2 1.0
HD2 C:TYR137 3.4 26.6 1.0
HG11 C:VAL110 3.4 25.7 1.0
HE1 C:HIS65 3.5 26.5 1.0
OE1 C:GLU140 3.6 26.9 1.0
CD C:GLU62 3.9 25.8 1.0
HE2 C:TYR137 3.9 26.6 1.0
HD11 C:LEU114 4.0 26.0 1.0
HG12 C:VAL110 4.0 25.7 1.0
HA C:GLU62 4.1 25.8 1.0
OE2 C:GLU140 4.1 26.9 1.0
CD2 C:TYR137 4.1 26.6 1.0
CG1 C:VAL110 4.1 25.7 1.0
CD2 C:HIS65 4.1 26.5 1.0
CD C:GLU140 4.1 26.9 1.0
NE2 C:HIS65 4.2 26.5 1.0
CG C:GLU27 4.3 25.9 1.0
OE2 C:GLU62 4.3 25.8 1.0
CD C:GLN141 4.3 26.2 1.0
CE2 C:TYR137 4.4 26.6 1.0
HB3 C:GLU27 4.4 25.9 1.0
HG13 C:VAL110 4.5 25.7 1.0
HG2 C:GLN141 4.5 26.2 1.0
HG3 C:GLU27 4.6 25.9 1.0
HD12 C:LEU114 4.7 26.0 1.0
HG2 C:GLU27 4.8 25.9 1.0
CD1 C:LEU114 4.8 26.0 1.0
CA C:HIS65 4.8 26.5 1.0
CB C:GLU27 4.9 25.9 1.0
HD2 C:HIS65 4.9 26.5 1.0
CG C:GLN141 4.9 26.2 1.0
HA C:GLU27 4.9 25.9 1.0
HE2 C:HIS65 4.9 26.5 1.0

Zinc binding site 4 out of 24 in 8tu8

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Zinc binding site 4 out of 24 in the Cryo-Em Structure of Apoferritin Collected By Serialem on Glacios at 2.1 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Cryo-Em Structure of Apoferritin Collected By Serialem on Glacios at 2.1 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn202

b:47.7
occ:1.00
OE1 D:GLU27 2.2 26.1 1.0
ND1 D:HIS65 2.3 26.7 1.0
OE2 D:GLU27 2.7 26.1 1.0
CD D:GLU27 2.8 26.1 1.0
OE1 D:GLU62 2.8 25.9 1.0
HB3 D:HIS65 3.0 26.7 1.0
CG D:HIS65 3.1 26.7 1.0
CE1 D:HIS65 3.2 26.7 1.0
HB2 D:HIS65 3.3 26.7 1.0
CB D:HIS65 3.3 26.7 1.0
HD2 D:TYR137 3.4 26.7 1.0
HG11 D:VAL110 3.4 25.9 1.0
OE1 D:GLN141 3.5 26.4 1.0
HE1 D:HIS65 3.5 26.7 1.0
OE1 D:GLU140 3.6 27.3 1.0
CD D:GLU62 3.9 25.9 1.0
HE2 D:TYR137 3.9 26.7 1.0
HD11 D:LEU114 4.0 26.2 1.0
HG12 D:VAL110 4.0 25.9 1.0
HA D:GLU62 4.0 25.9 1.0
OE2 D:GLU140 4.1 27.3 1.0
CD2 D:TYR137 4.1 26.7 1.0
CD2 D:HIS65 4.1 26.7 1.0
CD D:GLU140 4.1 27.3 1.0
CG1 D:VAL110 4.1 25.9 1.0
NE2 D:HIS65 4.2 26.7 1.0
CG D:GLU27 4.3 26.1 1.0
OE2 D:GLU62 4.3 25.9 1.0
CD D:GLN141 4.4 26.4 1.0
CE2 D:TYR137 4.4 26.7 1.0
HB3 D:GLU27 4.4 26.1 1.0
HG13 D:VAL110 4.5 25.9 1.0
HG2 D:GLN141 4.5 26.4 1.0
HG3 D:GLU27 4.6 26.1 1.0
HD12 D:LEU114 4.8 26.2 1.0
HG2 D:GLU27 4.8 26.1 1.0
CA D:HIS65 4.8 26.7 1.0
CD1 D:LEU114 4.8 26.2 1.0
CB D:GLU27 4.9 26.1 1.0
HD2 D:HIS65 4.9 26.7 1.0
HA D:GLU27 4.9 26.1 1.0
HE2 D:HIS65 4.9 26.7 1.0
CA D:GLU62 5.0 25.9 1.0

Zinc binding site 5 out of 24 in 8tu8

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Zinc binding site 5 out of 24 in the Cryo-Em Structure of Apoferritin Collected By Serialem on Glacios at 2.1 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Cryo-Em Structure of Apoferritin Collected By Serialem on Glacios at 2.1 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn201

b:48.6
occ:1.00
OE1 E:GLU27 2.2 26.0 1.0
ND1 E:HIS65 2.3 26.7 1.0
OE1 E:GLU62 2.8 25.9 1.0
OE2 E:GLU27 2.8 26.0 1.0
CD E:GLU27 2.8 26.0 1.0
HB3 E:HIS65 3.0 26.7 1.0
CG E:HIS65 3.0 26.7 1.0
HB2 E:HIS65 3.2 26.7 1.0
CE1 E:HIS65 3.2 26.7 1.0
CB E:HIS65 3.3 26.7 1.0
OE1 E:GLN141 3.4 26.4 1.0
HD2 E:TYR137 3.4 26.7 1.0
HG11 E:VAL110 3.5 25.9 1.0
HE1 E:HIS65 3.5 26.7 1.0
OE1 E:GLU140 3.5 27.1 1.0
CD E:GLU62 3.9 25.9 1.0
HE2 E:TYR137 3.9 26.7 1.0
HA E:GLU62 4.0 25.9 1.0
OE2 E:GLU140 4.0 27.1 1.0
HD11 E:LEU114 4.1 26.2 1.0
HG12 E:VAL110 4.1 25.9 1.0
CD E:GLU140 4.1 27.1 1.0
CD2 E:TYR137 4.1 26.7 1.0
CD2 E:HIS65 4.1 26.7 1.0
CG1 E:VAL110 4.2 25.9 1.0
NE2 E:HIS65 4.2 26.7 1.0
OE2 E:GLU62 4.3 25.9 1.0
CG E:GLU27 4.3 26.0 1.0
CD E:GLN141 4.3 26.4 1.0
CE2 E:TYR137 4.4 26.7 1.0
HB3 E:GLU27 4.4 26.0 1.0
HG2 E:GLN141 4.5 26.4 1.0
HG13 E:VAL110 4.5 25.9 1.0
HG3 E:GLU27 4.6 26.0 1.0
HD12 E:LEU114 4.8 26.2 1.0
CA E:HIS65 4.8 26.7 1.0
HG2 E:GLU27 4.8 26.0 1.0
CD1 E:LEU114 4.9 26.2 1.0
CB E:GLU27 4.9 26.0 1.0
HD2 E:HIS65 4.9 26.7 1.0
CG E:GLN141 5.0 26.4 1.0
HE2 E:HIS65 5.0 26.7 1.0
HA E:GLU27 5.0 26.0 1.0
CA E:GLU62 5.0 25.9 1.0

Zinc binding site 6 out of 24 in 8tu8

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Zinc binding site 6 out of 24 in the Cryo-Em Structure of Apoferritin Collected By Serialem on Glacios at 2.1 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Cryo-Em Structure of Apoferritin Collected By Serialem on Glacios at 2.1 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Zn201

b:47.0
occ:1.00
OE1 F:GLU27 2.2 26.1 1.0
ND1 F:HIS65 2.3 26.7 1.0
OE2 F:GLU27 2.7 26.1 1.0
CD F:GLU27 2.8 26.1 1.0
OE1 F:GLU62 2.8 25.9 1.0
HB3 F:HIS65 3.0 26.7 1.0
CG F:HIS65 3.1 26.7 1.0
CE1 F:HIS65 3.2 26.7 1.0
HB2 F:HIS65 3.3 26.7 1.0
CB F:HIS65 3.3 26.7 1.0
HD2 F:TYR137 3.4 26.6 1.0
HG11 F:VAL110 3.4 25.9 1.0
OE1 F:GLN141 3.5 26.3 1.0
HE1 F:HIS65 3.5 26.7 1.0
OE1 F:GLU140 3.6 27.1 1.0
CD F:GLU62 3.9 25.9 1.0
HE2 F:TYR137 3.9 26.6 1.0
HD11 F:LEU114 4.0 26.2 1.0
HG12 F:VAL110 4.0 25.9 1.0
HA F:GLU62 4.0 25.9 1.0
OE2 F:GLU140 4.1 27.1 1.0
CD2 F:TYR137 4.1 26.6 1.0
CD F:GLU140 4.1 27.1 1.0
CD2 F:HIS65 4.1 26.7 1.0
CG1 F:VAL110 4.1 25.9 1.0
NE2 F:HIS65 4.2 26.7 1.0
OE2 F:GLU62 4.3 25.9 1.0
CG F:GLU27 4.3 26.1 1.0
CE2 F:TYR137 4.4 26.6 1.0
CD F:GLN141 4.4 26.3 1.0
HB3 F:GLU27 4.4 26.1 1.0
HG13 F:VAL110 4.5 25.9 1.0
HG2 F:GLN141 4.6 26.3 1.0
HG3 F:GLU27 4.6 26.1 1.0
HD12 F:LEU114 4.8 26.2 1.0
HG2 F:GLU27 4.8 26.1 1.0
CD1 F:LEU114 4.8 26.2 1.0
CA F:HIS65 4.8 26.7 1.0
CB F:GLU27 4.9 26.1 1.0
HD2 F:HIS65 4.9 26.7 1.0
HA F:GLU27 4.9 26.1 1.0
HE2 F:HIS65 4.9 26.7 1.0
CA F:GLU62 5.0 25.9 1.0

Zinc binding site 7 out of 24 in 8tu8

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Zinc binding site 7 out of 24 in the Cryo-Em Structure of Apoferritin Collected By Serialem on Glacios at 2.1 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Cryo-Em Structure of Apoferritin Collected By Serialem on Glacios at 2.1 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Zn201

b:47.6
occ:1.00
OE1 G:GLU27 2.1 26.1 1.0
ND1 G:HIS65 2.3 26.7 1.0
OE1 G:GLU62 2.8 25.9 1.0
CD G:GLU27 2.8 26.1 1.0
OE2 G:GLU27 2.8 26.1 1.0
HB3 G:HIS65 3.0 26.7 1.0
CG G:HIS65 3.1 26.7 1.0
CE1 G:HIS65 3.2 26.7 1.0
HB2 G:HIS65 3.3 26.7 1.0
CB G:HIS65 3.3 26.7 1.0
HD2 G:TYR137 3.4 26.6 1.0
HG11 G:VAL110 3.4 25.8 1.0
OE1 G:GLN141 3.5 26.3 1.0
HE1 G:HIS65 3.5 26.7 1.0
OE1 G:GLU140 3.6 27.1 1.0
CD G:GLU62 3.9 25.9 1.0
HE2 G:TYR137 3.9 26.6 1.0
HD11 G:LEU114 4.0 26.2 1.0
HG12 G:VAL110 4.0 25.8 1.0
HA G:GLU62 4.0 25.9 1.0
OE2 G:GLU140 4.1 27.1 1.0
CD2 G:TYR137 4.1 26.6 1.0
CD2 G:HIS65 4.1 26.7 1.0
CD G:GLU140 4.1 27.1 1.0
CG1 G:VAL110 4.1 25.8 1.0
NE2 G:HIS65 4.2 26.7 1.0
CG G:GLU27 4.3 26.1 1.0
OE2 G:GLU62 4.3 25.9 1.0
HB3 G:GLU27 4.4 26.1 1.0
CD G:GLN141 4.4 26.3 1.0
CE2 G:TYR137 4.4 26.6 1.0
HG13 G:VAL110 4.5 25.8 1.0
HG2 G:GLN141 4.5 26.3 1.0
HG3 G:GLU27 4.6 26.1 1.0
HG2 G:GLU27 4.8 26.1 1.0
HD12 G:LEU114 4.8 26.2 1.0
CA G:HIS65 4.8 26.7 1.0
CD1 G:LEU114 4.8 26.2 1.0
CB G:GLU27 4.8 26.1 1.0
HD2 G:HIS65 4.9 26.7 1.0
HA G:GLU27 4.9 26.1 1.0
HE2 G:HIS65 4.9 26.7 1.0
CA G:GLU62 5.0 25.9 1.0

Zinc binding site 8 out of 24 in 8tu8

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Zinc binding site 8 out of 24 in the Cryo-Em Structure of Apoferritin Collected By Serialem on Glacios at 2.1 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Cryo-Em Structure of Apoferritin Collected By Serialem on Glacios at 2.1 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Zn201

b:42.8
occ:1.00
CG H:HIS65 1.2 27.6 1.0
CD2 H:HIS65 1.6 27.6 1.0
HB3 H:HIS65 1.6 27.6 1.0
CB H:HIS65 1.7 27.6 1.0
HD2 H:HIS65 1.9 27.6 1.0
HB2 H:HIS65 2.1 27.6 1.0
ND1 H:HIS65 2.3 27.6 1.0
NE2 H:HIS65 2.6 27.6 1.0
HE2 H:TYR137 2.9 26.9 1.0
CE1 H:HIS65 2.9 27.6 1.0
CA H:HIS65 3.0 27.6 1.0
OE1 H:GLU27 3.2 26.1 1.0
HA H:HIS65 3.2 27.6 1.0
HE2 H:HIS65 3.3 27.6 1.0
HD2 H:TYR137 3.4 26.9 1.0
CE2 H:TYR137 3.4 26.9 1.0
CD H:GLU27 3.7 26.1 1.0
CD2 H:TYR137 3.7 26.9 1.0
H H:HIS65 3.7 27.6 1.0
OE2 H:GLU27 3.7 26.1 1.0
HA H:GLU62 3.8 26.2 1.0
HE1 H:HIS65 3.8 27.6 1.0
OE1 H:GLU140 3.8 27.2 1.0
N H:HIS65 3.9 27.6 1.0
OE1 H:GLU62 3.9 26.2 1.0
C H:HIS65 4.0 27.6 1.0
O H:GLU61 4.1 26.6 1.0
CD H:GLU140 4.4 27.2 1.0
HH H:TYR137 4.5 26.9 1.0
CZ H:TYR137 4.5 26.9 1.0
HB3 H:GLU27 4.5 26.1 1.0
O H:GLU62 4.6 26.2 1.0
O H:HIS65 4.6 27.6 1.0
OE2 H:GLU140 4.7 27.2 1.0
H H:ALA66 4.7 26.1 1.0
CA H:GLU62 4.7 26.2 1.0
CD H:GLU62 4.7 26.2 1.0
N H:ALA66 4.7 26.1 1.0
CG H:GLU27 4.8 26.1 1.0
HG3 H:GLU140 4.8 27.2 1.0
HG3 H:GLU27 4.8 26.1 1.0
CG H:TYR137 4.8 26.9 1.0
OH H:TYR137 4.9 26.9 1.0
HA H:TYR137 4.9 26.9 1.0
C H:GLU61 5.0 26.6 1.0
OE2 H:GLU62 5.0 26.2 1.0

Zinc binding site 9 out of 24 in 8tu8

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Zinc binding site 9 out of 24 in the Cryo-Em Structure of Apoferritin Collected By Serialem on Glacios at 2.1 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of Cryo-Em Structure of Apoferritin Collected By Serialem on Glacios at 2.1 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Zn202

b:46.7
occ:1.00
OE1 I:GLU27 2.1 25.8 1.0
ND1 I:HIS65 2.3 26.4 1.0
OE2 I:GLU62 2.8 25.8 1.0
CD I:GLU27 2.8 25.8 1.0
OE2 I:GLU27 2.8 25.8 1.0
HB3 I:HIS65 3.0 26.4 1.0
CG I:HIS65 3.1 26.4 1.0
CE1 I:HIS65 3.2 26.4 1.0
HB2 I:HIS65 3.3 26.4 1.0
CB I:HIS65 3.3 26.4 1.0
HD2 I:TYR137 3.4 26.5 1.0
HG11 I:VAL110 3.4 25.7 1.0
OE1 I:GLN141 3.4 26.3 1.0
HE1 I:HIS65 3.5 26.4 1.0
OE1 I:GLU140 3.5 26.9 1.0
CD I:GLU62 3.9 25.8 1.0
HE2 I:TYR137 3.9 26.5 1.0
HD11 I:LEU114 4.0 26.1 1.0
HG12 I:VAL110 4.0 25.7 1.0
OE2 I:GLU140 4.1 26.9 1.0
HA I:GLU62 4.1 25.8 1.0
CD I:GLU140 4.1 26.9 1.0
CD2 I:TYR137 4.1 26.5 1.0
CD2 I:HIS65 4.1 26.4 1.0
CG1 I:VAL110 4.1 25.7 1.0
NE2 I:HIS65 4.2 26.4 1.0
OE1 I:GLU62 4.2 25.8 1.0
CG I:GLU27 4.3 25.8 1.0
HB3 I:GLU27 4.4 25.8 1.0
CE2 I:TYR137 4.4 26.5 1.0
CD I:GLN141 4.4 26.3 1.0
HG13 I:VAL110 4.5 25.7 1.0
HG2 I:GLN141 4.6 26.3 1.0
HG3 I:GLU27 4.7 25.8 1.0
HD12 I:LEU114 4.8 26.1 1.0
HG2 I:GLU27 4.8 25.8 1.0
CA I:HIS65 4.8 26.4 1.0
CD1 I:LEU114 4.8 26.1 1.0
CB I:GLU27 4.8 25.8 1.0
HD2 I:HIS65 4.9 26.4 1.0
HE2 I:HIS65 4.9 26.4 1.0
HA I:GLU27 4.9 25.8 1.0
HE21 I:GLN23 5.0 25.5 1.0

Zinc binding site 10 out of 24 in 8tu8

Go back to Zinc Binding Sites List in 8tu8
Zinc binding site 10 out of 24 in the Cryo-Em Structure of Apoferritin Collected By Serialem on Glacios at 2.1 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 10 of Cryo-Em Structure of Apoferritin Collected By Serialem on Glacios at 2.1 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Zn201

b:47.0
occ:1.00
OE1 J:GLU27 2.1 26.0 1.0
ND1 J:HIS65 2.3 26.6 1.0
OE1 J:GLU62 2.8 26.0 1.0
CD J:GLU27 2.8 26.0 1.0
OE2 J:GLU27 2.8 26.0 1.0
HB3 J:HIS65 3.0 26.6 1.0
CG J:HIS65 3.1 26.6 1.0
CE1 J:HIS65 3.2 26.6 1.0
HB2 J:HIS65 3.3 26.6 1.0
CB J:HIS65 3.3 26.6 1.0
HD2 J:TYR137 3.4 26.5 1.0
HG11 J:VAL110 3.4 25.7 1.0
OE1 J:GLN141 3.5 26.2 1.0
HE1 J:HIS65 3.5 26.6 1.0
OE1 J:GLU140 3.6 27.0 1.0
CD J:GLU62 3.9 26.0 1.0
HE2 J:TYR137 3.9 26.5 1.0
HD11 J:LEU114 4.0 26.1 1.0
HA J:GLU62 4.0 26.0 1.0
HG12 J:VAL110 4.0 25.7 1.0
OE2 J:GLU140 4.1 27.0 1.0
CD2 J:HIS65 4.1 26.6 1.0
CD2 J:TYR137 4.1 26.5 1.0
CD J:GLU140 4.1 27.0 1.0
CG1 J:VAL110 4.1 25.7 1.0
NE2 J:HIS65 4.2 26.6 1.0
OE2 J:GLU62 4.2 26.0 1.0
CG J:GLU27 4.3 26.0 1.0
HB3 J:GLU27 4.3 26.0 1.0
CD J:GLN141 4.4 26.2 1.0
CE2 J:TYR137 4.4 26.5 1.0
HG13 J:VAL110 4.5 25.7 1.0
HG2 J:GLN141 4.6 26.2 1.0
HG3 J:GLU27 4.7 26.0 1.0
HD12 J:LEU114 4.8 26.1 1.0
HG2 J:GLU27 4.8 26.0 1.0
CB J:GLU27 4.8 26.0 1.0
CA J:HIS65 4.8 26.6 1.0
CD1 J:LEU114 4.8 26.1 1.0
HD2 J:HIS65 4.9 26.6 1.0
HE2 J:HIS65 4.9 26.6 1.0
HA J:GLU27 5.0 26.0 1.0
CA J:GLU62 5.0 26.0 1.0

Reference:

L.Jia, E.A.Ruben, S.K.Olsen, E.V.Wasmuth. Cryo-Em Structure of Apoferritin Collected By Serialem on Glacios at 2.1 Angstrom Resolution To Be Published.
Page generated: Sun Feb 9 00:48:18 2025

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