Zinc in PDB 8tu7: Cryo-Em Structure of Apoferritin Collected By Epu on Glacios at 2.5 Angstrom Resolution
Enzymatic activity of Cryo-Em Structure of Apoferritin Collected By Epu on Glacios at 2.5 Angstrom Resolution
All present enzymatic activity of Cryo-Em Structure of Apoferritin Collected By Epu on Glacios at 2.5 Angstrom Resolution:
1.16.3.1;
Other elements in 8tu7:
The structure of Cryo-Em Structure of Apoferritin Collected By Epu on Glacios at 2.5 Angstrom Resolution also contains other interesting chemical elements:
Zinc Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
24;
Binding sites:
The binding sites of Zinc atom in the Cryo-Em Structure of Apoferritin Collected By Epu on Glacios at 2.5 Angstrom Resolution
(pdb code 8tu7). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 24 binding sites of Zinc where determined in the
Cryo-Em Structure of Apoferritin Collected By Epu on Glacios at 2.5 Angstrom Resolution, PDB code: 8tu7:
Jump to Zinc binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Zinc binding site 1 out
of 24 in 8tu7
Go back to
Zinc Binding Sites List in 8tu7
Zinc binding site 1 out
of 24 in the Cryo-Em Structure of Apoferritin Collected By Epu on Glacios at 2.5 Angstrom Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Cryo-Em Structure of Apoferritin Collected By Epu on Glacios at 2.5 Angstrom Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn202
b:92.2
occ:1.00
|
OE2
|
A:GLU62
|
1.9
|
68.8
|
1.0
|
|
OE2
|
A:GLU27
|
2.2
|
68.3
|
1.0
|
|
ND1
|
A:HIS65
|
2.3
|
69.2
|
1.0
|
|
CD
|
A:GLU62
|
2.5
|
68.8
|
1.0
|
|
OE1
|
A:GLU62
|
2.7
|
68.8
|
1.0
|
|
CD
|
A:GLU27
|
3.1
|
68.3
|
1.0
|
|
HB2
|
A:HIS65
|
3.2
|
69.2
|
1.0
|
|
CG
|
A:HIS65
|
3.2
|
69.2
|
1.0
|
|
CE1
|
A:HIS65
|
3.2
|
69.2
|
1.0
|
|
HA
|
A:GLU62
|
3.3
|
68.8
|
1.0
|
|
HG11
|
A:VAL110
|
3.3
|
68.0
|
1.0
|
|
OE1
|
A:GLU27
|
3.4
|
68.3
|
1.0
|
|
HB3
|
A:HIS65
|
3.4
|
69.2
|
1.0
|
|
HE1
|
A:HIS65
|
3.4
|
69.2
|
1.0
|
|
CB
|
A:HIS65
|
3.5
|
69.2
|
1.0
|
|
HE21
|
A:GLN141
|
3.6
|
69.0
|
1.0
|
|
HE22
|
A:GLN141
|
3.6
|
69.0
|
1.0
|
|
NE2
|
A:GLN141
|
3.7
|
69.0
|
1.0
|
|
CG
|
A:GLU62
|
3.8
|
68.8
|
1.0
|
|
HG2
|
A:GLU62
|
3.9
|
68.8
|
1.0
|
|
CA
|
A:GLU62
|
4.2
|
68.8
|
1.0
|
|
CG1
|
A:VAL110
|
4.2
|
68.0
|
1.0
|
|
HG12
|
A:VAL110
|
4.3
|
68.0
|
1.0
|
|
HB3
|
A:GLU27
|
4.3
|
68.3
|
1.0
|
|
NE2
|
A:HIS65
|
4.3
|
69.2
|
1.0
|
|
HD2
|
A:TYR137
|
4.4
|
69.0
|
1.0
|
|
CD2
|
A:HIS65
|
4.4
|
69.2
|
1.0
|
|
CB
|
A:GLU62
|
4.4
|
68.8
|
1.0
|
|
HB3
|
A:GLU62
|
4.5
|
68.8
|
1.0
|
|
CG
|
A:GLU27
|
4.5
|
68.3
|
1.0
|
|
HG3
|
A:GLU62
|
4.5
|
68.8
|
1.0
|
|
CD
|
A:GLN141
|
4.6
|
69.0
|
1.0
|
|
HG13
|
A:VAL110
|
4.6
|
68.0
|
1.0
|
|
HA
|
A:GLU27
|
4.7
|
68.3
|
1.0
|
|
HE2
|
A:TYR137
|
4.7
|
69.0
|
1.0
|
|
OE2
|
A:GLU107
|
4.8
|
68.3
|
1.0
|
|
HG2
|
A:GLN141
|
4.8
|
69.0
|
1.0
|
|
CB
|
A:GLU27
|
4.8
|
68.3
|
1.0
|
|
HD11
|
A:LEU114
|
4.9
|
68.7
|
1.0
|
|
O
|
A:GLU62
|
4.9
|
68.8
|
1.0
|
|
HG2
|
A:GLU27
|
4.9
|
68.3
|
1.0
|
|
Zinc binding site 2 out
of 24 in 8tu7
Go back to
Zinc Binding Sites List in 8tu7
Zinc binding site 2 out
of 24 in the Cryo-Em Structure of Apoferritin Collected By Epu on Glacios at 2.5 Angstrom Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Cryo-Em Structure of Apoferritin Collected By Epu on Glacios at 2.5 Angstrom Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Zn202
b:90.7
occ:1.00
|
OE2
|
B:GLU62
|
1.9
|
68.5
|
1.0
|
|
OE1
|
B:GLU27
|
2.1
|
68.2
|
1.0
|
|
ND1
|
B:HIS65
|
2.3
|
69.2
|
1.0
|
|
CD
|
B:GLU62
|
2.5
|
68.5
|
1.0
|
|
OE1
|
B:GLU62
|
2.7
|
68.5
|
1.0
|
|
CD
|
B:GLU27
|
3.1
|
68.2
|
1.0
|
|
HB2
|
B:HIS65
|
3.2
|
69.2
|
1.0
|
|
CG
|
B:HIS65
|
3.2
|
69.2
|
1.0
|
|
CE1
|
B:HIS65
|
3.2
|
69.2
|
1.0
|
|
OE2
|
B:GLU27
|
3.3
|
68.2
|
1.0
|
|
HG11
|
B:VAL110
|
3.3
|
68.3
|
1.0
|
|
HA
|
B:GLU62
|
3.3
|
68.5
|
1.0
|
|
HB3
|
B:HIS65
|
3.4
|
69.2
|
1.0
|
|
HE1
|
B:HIS65
|
3.4
|
69.2
|
1.0
|
|
CB
|
B:HIS65
|
3.5
|
69.2
|
1.0
|
|
HE21
|
B:GLN141
|
3.5
|
69.1
|
1.0
|
|
HE22
|
B:GLN141
|
3.6
|
69.1
|
1.0
|
|
NE2
|
B:GLN141
|
3.7
|
69.1
|
1.0
|
|
CG
|
B:GLU62
|
3.9
|
68.5
|
1.0
|
|
HG2
|
B:GLU62
|
4.1
|
68.5
|
1.0
|
|
CG1
|
B:VAL110
|
4.2
|
68.3
|
1.0
|
|
HG12
|
B:VAL110
|
4.2
|
68.3
|
1.0
|
|
CA
|
B:GLU62
|
4.2
|
68.5
|
1.0
|
|
HD2
|
B:TYR137
|
4.3
|
69.0
|
1.0
|
|
HB3
|
B:GLU27
|
4.3
|
68.2
|
1.0
|
|
NE2
|
B:HIS65
|
4.3
|
69.2
|
1.0
|
|
CD2
|
B:HIS65
|
4.4
|
69.2
|
1.0
|
|
CG
|
B:GLU27
|
4.5
|
68.2
|
1.0
|
|
CB
|
B:GLU62
|
4.5
|
68.5
|
1.0
|
|
CD
|
B:GLN141
|
4.5
|
69.1
|
1.0
|
|
HG3
|
B:GLU62
|
4.6
|
68.5
|
1.0
|
|
HB3
|
B:GLU62
|
4.6
|
68.5
|
1.0
|
|
HA
|
B:GLU27
|
4.6
|
68.2
|
1.0
|
|
HG13
|
B:VAL110
|
4.6
|
68.3
|
1.0
|
|
HE2
|
B:TYR137
|
4.7
|
69.0
|
1.0
|
|
HG2
|
B:GLN141
|
4.7
|
69.1
|
1.0
|
|
OE2
|
B:GLU107
|
4.8
|
68.3
|
1.0
|
|
CB
|
B:GLU27
|
4.8
|
68.2
|
1.0
|
|
HD11
|
B:LEU114
|
4.8
|
68.6
|
1.0
|
|
HG21
|
B:VAL110
|
4.8
|
68.3
|
1.0
|
|
O
|
B:GLU62
|
4.9
|
68.5
|
1.0
|
|
HG3
|
B:GLU27
|
5.0
|
68.2
|
1.0
|
|
HG2
|
B:GLU27
|
5.0
|
68.2
|
1.0
|
|
Zinc binding site 3 out
of 24 in 8tu7
Go back to
Zinc Binding Sites List in 8tu7
Zinc binding site 3 out
of 24 in the Cryo-Em Structure of Apoferritin Collected By Epu on Glacios at 2.5 Angstrom Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 3 of Cryo-Em Structure of Apoferritin Collected By Epu on Glacios at 2.5 Angstrom Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Zn202
b:92.1
occ:1.00
|
OE1
|
C:GLU62
|
1.9
|
68.9
|
1.0
|
|
OE1
|
C:GLU27
|
2.2
|
68.3
|
1.0
|
|
ND1
|
C:HIS65
|
2.3
|
69.3
|
1.0
|
|
CD
|
C:GLU62
|
2.5
|
68.9
|
1.0
|
|
OE2
|
C:GLU62
|
2.7
|
68.9
|
1.0
|
|
CD
|
C:GLU27
|
3.1
|
68.3
|
1.0
|
|
CE1
|
C:HIS65
|
3.2
|
69.3
|
1.0
|
|
CG
|
C:HIS65
|
3.3
|
69.3
|
1.0
|
|
HB2
|
C:HIS65
|
3.3
|
69.3
|
1.0
|
|
HA
|
C:GLU62
|
3.3
|
68.9
|
1.0
|
|
HG11
|
C:VAL110
|
3.4
|
68.3
|
1.0
|
|
HE1
|
C:HIS65
|
3.4
|
69.3
|
1.0
|
|
OE2
|
C:GLU27
|
3.4
|
68.3
|
1.0
|
|
HB3
|
C:HIS65
|
3.5
|
69.3
|
1.0
|
|
HE21
|
C:GLN141
|
3.6
|
69.2
|
1.0
|
|
CB
|
C:HIS65
|
3.6
|
69.3
|
1.0
|
|
HE22
|
C:GLN141
|
3.7
|
69.2
|
1.0
|
|
NE2
|
C:GLN141
|
3.7
|
69.2
|
1.0
|
|
CG
|
C:GLU62
|
3.8
|
68.9
|
1.0
|
|
HG2
|
C:GLU62
|
3.9
|
68.9
|
1.0
|
|
CA
|
C:GLU62
|
4.2
|
68.9
|
1.0
|
|
CG1
|
C:VAL110
|
4.2
|
68.3
|
1.0
|
|
HG12
|
C:VAL110
|
4.3
|
68.3
|
1.0
|
|
NE2
|
C:HIS65
|
4.3
|
69.3
|
1.0
|
|
CD2
|
C:HIS65
|
4.4
|
69.3
|
1.0
|
|
HB3
|
C:GLU27
|
4.4
|
68.3
|
1.0
|
|
HD2
|
C:TYR137
|
4.4
|
69.0
|
1.0
|
|
CB
|
C:GLU62
|
4.4
|
68.9
|
1.0
|
|
CD
|
C:GLN141
|
4.5
|
69.2
|
1.0
|
|
HG3
|
C:GLU62
|
4.5
|
68.9
|
1.0
|
|
HB3
|
C:GLU62
|
4.5
|
68.9
|
1.0
|
|
CG
|
C:GLU27
|
4.5
|
68.3
|
1.0
|
|
HG2
|
C:GLN141
|
4.6
|
69.2
|
1.0
|
|
HA
|
C:GLU27
|
4.6
|
68.3
|
1.0
|
|
HG13
|
C:VAL110
|
4.6
|
68.3
|
1.0
|
|
OE1
|
C:GLU107
|
4.7
|
68.4
|
1.0
|
|
HE2
|
C:TYR137
|
4.8
|
69.0
|
1.0
|
|
HG21
|
C:VAL110
|
4.8
|
68.3
|
1.0
|
|
HD11
|
C:LEU114
|
4.9
|
68.7
|
1.0
|
|
CB
|
C:GLU27
|
4.9
|
68.3
|
1.0
|
|
O
|
C:GLU62
|
4.9
|
68.9
|
1.0
|
|
Zinc binding site 4 out
of 24 in 8tu7
Go back to
Zinc Binding Sites List in 8tu7
Zinc binding site 4 out
of 24 in the Cryo-Em Structure of Apoferritin Collected By Epu on Glacios at 2.5 Angstrom Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 4 of Cryo-Em Structure of Apoferritin Collected By Epu on Glacios at 2.5 Angstrom Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Zn202
b:91.4
occ:1.00
|
OE1
|
D:GLU62
|
2.0
|
68.5
|
1.0
|
|
OE2
|
D:GLU27
|
2.3
|
68.0
|
1.0
|
|
ND1
|
D:HIS65
|
2.3
|
68.9
|
1.0
|
|
CD
|
D:GLU62
|
2.5
|
68.5
|
1.0
|
|
OE2
|
D:GLU62
|
2.7
|
68.5
|
1.0
|
|
CE1
|
D:HIS65
|
3.2
|
68.9
|
1.0
|
|
CD
|
D:GLU27
|
3.3
|
68.0
|
1.0
|
|
HA
|
D:GLU62
|
3.3
|
68.5
|
1.0
|
|
CG
|
D:HIS65
|
3.3
|
68.9
|
1.0
|
|
HB2
|
D:HIS65
|
3.3
|
68.9
|
1.0
|
|
HE1
|
D:HIS65
|
3.3
|
68.9
|
1.0
|
|
HG11
|
D:VAL110
|
3.4
|
68.1
|
1.0
|
|
OE1
|
D:GLU27
|
3.5
|
68.0
|
1.0
|
|
HB3
|
D:HIS65
|
3.5
|
68.9
|
1.0
|
|
OE1
|
D:GLN141
|
3.6
|
68.7
|
1.0
|
|
CB
|
D:HIS65
|
3.6
|
68.9
|
1.0
|
|
CG
|
D:GLU62
|
3.7
|
68.5
|
1.0
|
|
HG2
|
D:GLU62
|
3.8
|
68.5
|
1.0
|
|
CA
|
D:GLU62
|
4.2
|
68.5
|
1.0
|
|
CG1
|
D:VAL110
|
4.2
|
68.1
|
1.0
|
|
HG12
|
D:VAL110
|
4.3
|
68.1
|
1.0
|
|
NE2
|
D:HIS65
|
4.3
|
68.9
|
1.0
|
|
CB
|
D:GLU62
|
4.4
|
68.5
|
1.0
|
|
CD2
|
D:HIS65
|
4.4
|
68.9
|
1.0
|
|
HB3
|
D:GLU27
|
4.4
|
68.0
|
1.0
|
|
HG3
|
D:GLU62
|
4.5
|
68.5
|
1.0
|
|
HB3
|
D:GLU62
|
4.5
|
68.5
|
1.0
|
|
CD
|
D:GLN141
|
4.5
|
68.7
|
1.0
|
|
HD2
|
D:TYR137
|
4.5
|
68.7
|
1.0
|
|
CG
|
D:GLU27
|
4.6
|
68.0
|
1.0
|
|
HA
|
D:GLU27
|
4.6
|
68.0
|
1.0
|
|
OE1
|
D:GLU107
|
4.7
|
68.0
|
1.0
|
|
HG13
|
D:VAL110
|
4.7
|
68.1
|
1.0
|
|
HE2
|
D:TYR137
|
4.8
|
68.7
|
1.0
|
|
HG21
|
D:VAL110
|
4.8
|
68.1
|
1.0
|
|
HG2
|
D:GLN141
|
4.9
|
68.7
|
1.0
|
|
O
|
D:GLU62
|
4.9
|
68.5
|
1.0
|
|
HD11
|
D:LEU114
|
5.0
|
68.4
|
1.0
|
|
CB
|
D:GLU27
|
5.0
|
68.0
|
1.0
|
|
N
|
D:GLU62
|
5.0
|
68.5
|
1.0
|
|
O
|
D:GLU61
|
5.0
|
68.5
|
1.0
|
|
Zinc binding site 5 out
of 24 in 8tu7
Go back to
Zinc Binding Sites List in 8tu7
Zinc binding site 5 out
of 24 in the Cryo-Em Structure of Apoferritin Collected By Epu on Glacios at 2.5 Angstrom Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 5 of Cryo-Em Structure of Apoferritin Collected By Epu on Glacios at 2.5 Angstrom Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Zn201
b:94.1
occ:1.00
|
OE2
|
E:GLU62
|
1.9
|
68.8
|
1.0
|
|
ND1
|
E:HIS65
|
2.3
|
69.4
|
1.0
|
|
CD
|
E:GLU62
|
2.5
|
68.8
|
1.0
|
|
OE1
|
E:GLU62
|
2.8
|
68.8
|
1.0
|
|
HB2
|
E:HIS65
|
3.0
|
69.4
|
1.0
|
|
OE2
|
E:GLU27
|
3.0
|
68.4
|
1.0
|
|
CG
|
E:HIS65
|
3.1
|
69.4
|
1.0
|
|
HB3
|
E:HIS65
|
3.2
|
69.4
|
1.0
|
|
HA
|
E:GLU62
|
3.2
|
68.8
|
1.0
|
|
CB
|
E:HIS65
|
3.3
|
69.4
|
1.0
|
|
CE1
|
E:HIS65
|
3.3
|
69.4
|
1.0
|
|
CD
|
E:GLU27
|
3.4
|
68.4
|
1.0
|
|
OE1
|
E:GLU27
|
3.5
|
68.4
|
1.0
|
|
HG11
|
E:VAL110
|
3.5
|
68.1
|
1.0
|
|
HE1
|
E:HIS65
|
3.6
|
69.4
|
1.0
|
|
HE21
|
E:GLN141
|
3.7
|
69.2
|
1.0
|
|
HB3
|
E:GLU27
|
3.8
|
68.4
|
1.0
|
|
CG
|
E:GLU62
|
3.8
|
68.8
|
1.0
|
|
HE22
|
E:GLN141
|
3.9
|
69.2
|
1.0
|
|
NE2
|
E:GLN141
|
3.9
|
69.2
|
1.0
|
|
HG2
|
E:GLU62
|
4.0
|
68.8
|
1.0
|
|
CA
|
E:GLU62
|
4.2
|
68.8
|
1.0
|
|
HD2
|
E:TYR137
|
4.2
|
69.3
|
1.0
|
|
CD2
|
E:HIS65
|
4.3
|
69.4
|
1.0
|
|
CG1
|
E:VAL110
|
4.4
|
68.1
|
1.0
|
|
HG12
|
E:VAL110
|
4.4
|
68.1
|
1.0
|
|
NE2
|
E:HIS65
|
4.4
|
69.4
|
1.0
|
|
CB
|
E:GLU62
|
4.4
|
68.8
|
1.0
|
|
CG
|
E:GLU27
|
4.5
|
68.4
|
1.0
|
|
HE2
|
E:TYR137
|
4.5
|
69.3
|
1.0
|
|
HB3
|
E:GLU62
|
4.6
|
68.8
|
1.0
|
|
HG3
|
E:GLU62
|
4.6
|
68.8
|
1.0
|
|
CB
|
E:GLU27
|
4.6
|
68.4
|
1.0
|
|
CD
|
E:GLN141
|
4.7
|
69.2
|
1.0
|
|
HG2
|
E:GLN141
|
4.7
|
69.2
|
1.0
|
|
HG2
|
E:GLU27
|
4.7
|
68.4
|
1.0
|
|
HG13
|
E:VAL110
|
4.7
|
68.1
|
1.0
|
|
HA
|
E:GLU27
|
4.8
|
68.4
|
1.0
|
|
O
|
E:GLU62
|
4.8
|
68.8
|
1.0
|
|
CA
|
E:HIS65
|
4.8
|
69.4
|
1.0
|
|
HD11
|
E:LEU114
|
4.9
|
68.8
|
1.0
|
|
O
|
E:GLU61
|
4.9
|
68.5
|
1.0
|
|
CD2
|
E:TYR137
|
4.9
|
69.3
|
1.0
|
|
C
|
E:GLU62
|
5.0
|
68.8
|
1.0
|
|
H
|
E:HIS65
|
5.0
|
69.4
|
1.0
|
|
Zinc binding site 6 out
of 24 in 8tu7
Go back to
Zinc Binding Sites List in 8tu7
Zinc binding site 6 out
of 24 in the Cryo-Em Structure of Apoferritin Collected By Epu on Glacios at 2.5 Angstrom Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 6 of Cryo-Em Structure of Apoferritin Collected By Epu on Glacios at 2.5 Angstrom Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Zn201
b:92.9
occ:1.00
|
OE2
|
F:GLU62
|
1.9
|
68.4
|
1.0
|
|
OE1
|
F:GLU27
|
2.2
|
68.0
|
1.0
|
|
ND1
|
F:HIS65
|
2.3
|
69.0
|
1.0
|
|
CD
|
F:GLU62
|
2.5
|
68.4
|
1.0
|
|
OE1
|
F:GLU62
|
2.8
|
68.4
|
1.0
|
|
CD
|
F:GLU27
|
3.1
|
68.0
|
1.0
|
|
CE1
|
F:HIS65
|
3.2
|
69.0
|
1.0
|
|
CG
|
F:HIS65
|
3.3
|
69.0
|
1.0
|
|
HB2
|
F:HIS65
|
3.3
|
69.0
|
1.0
|
|
OE2
|
F:GLU27
|
3.3
|
68.0
|
1.0
|
|
HA
|
F:GLU62
|
3.3
|
68.4
|
1.0
|
|
HG11
|
F:VAL110
|
3.3
|
67.9
|
1.0
|
|
HE1
|
F:HIS65
|
3.4
|
69.0
|
1.0
|
|
HB3
|
F:HIS65
|
3.4
|
69.0
|
1.0
|
|
CB
|
F:HIS65
|
3.5
|
69.0
|
1.0
|
|
OE1
|
F:GLN141
|
3.7
|
68.7
|
1.0
|
|
CG
|
F:GLU62
|
3.9
|
68.4
|
1.0
|
|
HE22
|
F:GLN141
|
3.9
|
68.7
|
1.0
|
|
HG2
|
F:GLU62
|
4.0
|
68.4
|
1.0
|
|
CG1
|
F:VAL110
|
4.2
|
67.9
|
1.0
|
|
CA
|
F:GLU62
|
4.2
|
68.4
|
1.0
|
|
HG12
|
F:VAL110
|
4.2
|
67.9
|
1.0
|
|
NE2
|
F:HIS65
|
4.3
|
69.0
|
1.0
|
|
HB3
|
F:GLU27
|
4.3
|
68.0
|
1.0
|
|
CD2
|
F:HIS65
|
4.4
|
69.0
|
1.0
|
|
HD2
|
F:TYR137
|
4.4
|
68.6
|
1.0
|
|
CG
|
F:GLU27
|
4.5
|
68.0
|
1.0
|
|
CB
|
F:GLU62
|
4.5
|
68.4
|
1.0
|
|
CD
|
F:GLN141
|
4.5
|
68.7
|
1.0
|
|
NE2
|
F:GLN141
|
4.5
|
68.7
|
1.0
|
|
HG3
|
F:GLU62
|
4.5
|
68.4
|
1.0
|
|
HB3
|
F:GLU62
|
4.6
|
68.4
|
1.0
|
|
HA
|
F:GLU27
|
4.6
|
68.0
|
1.0
|
|
HG13
|
F:VAL110
|
4.6
|
67.9
|
1.0
|
|
HE2
|
F:TYR137
|
4.7
|
68.6
|
1.0
|
|
OE1
|
F:GLU107
|
4.8
|
68.1
|
1.0
|
|
HD11
|
F:LEU114
|
4.8
|
68.2
|
1.0
|
|
HG21
|
F:VAL110
|
4.8
|
67.9
|
1.0
|
|
CB
|
F:GLU27
|
4.8
|
68.0
|
1.0
|
|
O
|
F:GLU62
|
4.9
|
68.4
|
1.0
|
|
HG3
|
F:GLU27
|
5.0
|
68.0
|
1.0
|
|
HG2
|
F:GLU27
|
5.0
|
68.0
|
1.0
|
|
Zinc binding site 7 out
of 24 in 8tu7
Go back to
Zinc Binding Sites List in 8tu7
Zinc binding site 7 out
of 24 in the Cryo-Em Structure of Apoferritin Collected By Epu on Glacios at 2.5 Angstrom Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 7 of Cryo-Em Structure of Apoferritin Collected By Epu on Glacios at 2.5 Angstrom Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Zn201
b:90.7
occ:1.00
|
OE1
|
G:GLU62
|
2.0
|
68.7
|
1.0
|
|
OE2
|
G:GLU27
|
2.3
|
68.4
|
1.0
|
|
ND1
|
G:HIS65
|
2.3
|
69.2
|
1.0
|
|
CD
|
G:GLU62
|
2.5
|
68.7
|
1.0
|
|
OE2
|
G:GLU62
|
2.7
|
68.7
|
1.0
|
|
CE1
|
G:HIS65
|
3.2
|
69.2
|
1.0
|
|
CD
|
G:GLU27
|
3.2
|
68.4
|
1.0
|
|
HE22
|
G:GLN141
|
3.3
|
69.2
|
1.0
|
|
HA
|
G:GLU62
|
3.3
|
68.7
|
1.0
|
|
CG
|
G:HIS65
|
3.3
|
69.2
|
1.0
|
|
HE1
|
G:HIS65
|
3.3
|
69.2
|
1.0
|
|
HB2
|
G:HIS65
|
3.3
|
69.2
|
1.0
|
|
HG11
|
G:VAL110
|
3.4
|
68.4
|
1.0
|
|
HE21
|
G:GLN141
|
3.4
|
69.2
|
1.0
|
|
OE1
|
G:GLU27
|
3.5
|
68.4
|
1.0
|
|
NE2
|
G:GLN141
|
3.5
|
69.2
|
1.0
|
|
HB3
|
G:HIS65
|
3.5
|
69.2
|
1.0
|
|
CB
|
G:HIS65
|
3.6
|
69.2
|
1.0
|
|
CG
|
G:GLU62
|
3.8
|
68.7
|
1.0
|
|
HG2
|
G:GLU62
|
3.8
|
68.7
|
1.0
|
|
CA
|
G:GLU62
|
4.2
|
68.7
|
1.0
|
|
CG1
|
G:VAL110
|
4.2
|
68.4
|
1.0
|
|
HG12
|
G:VAL110
|
4.2
|
68.4
|
1.0
|
|
NE2
|
G:HIS65
|
4.3
|
69.2
|
1.0
|
|
CD2
|
G:HIS65
|
4.4
|
69.2
|
1.0
|
|
CB
|
G:GLU62
|
4.4
|
68.7
|
1.0
|
|
HB3
|
G:GLU27
|
4.4
|
68.4
|
1.0
|
|
CD
|
G:GLN141
|
4.5
|
69.2
|
1.0
|
|
HD2
|
G:TYR137
|
4.5
|
68.9
|
1.0
|
|
HG3
|
G:GLU62
|
4.5
|
68.7
|
1.0
|
|
HB3
|
G:GLU62
|
4.5
|
68.7
|
1.0
|
|
CG
|
G:GLU27
|
4.6
|
68.4
|
1.0
|
|
HA
|
G:GLU27
|
4.6
|
68.4
|
1.0
|
|
HG13
|
G:VAL110
|
4.7
|
68.4
|
1.0
|
|
OE2
|
G:GLU107
|
4.7
|
68.5
|
1.0
|
|
HE2
|
G:TYR137
|
4.8
|
68.9
|
1.0
|
|
HG21
|
G:VAL110
|
4.8
|
68.4
|
1.0
|
|
HG2
|
G:GLN141
|
4.9
|
69.2
|
1.0
|
|
HD11
|
G:LEU114
|
4.9
|
68.7
|
1.0
|
|
O
|
G:GLU62
|
4.9
|
68.7
|
1.0
|
|
CB
|
G:GLU27
|
5.0
|
68.4
|
1.0
|
|
OE1
|
G:GLU107
|
5.0
|
68.5
|
1.0
|
|
N
|
G:GLU62
|
5.0
|
68.7
|
1.0
|
|
Zinc binding site 8 out
of 24 in 8tu7
Go back to
Zinc Binding Sites List in 8tu7
Zinc binding site 8 out
of 24 in the Cryo-Em Structure of Apoferritin Collected By Epu on Glacios at 2.5 Angstrom Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 8 of Cryo-Em Structure of Apoferritin Collected By Epu on Glacios at 2.5 Angstrom Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Zn201
b:91.8
occ:1.00
|
OE2
|
H:GLU62
|
1.9
|
68.6
|
1.0
|
|
OE2
|
H:GLU27
|
2.2
|
68.3
|
1.0
|
|
ND1
|
H:HIS65
|
2.3
|
69.2
|
1.0
|
|
CD
|
H:GLU62
|
2.5
|
68.6
|
1.0
|
|
OE1
|
H:GLU62
|
2.7
|
68.6
|
1.0
|
|
CD
|
H:GLU27
|
3.1
|
68.3
|
1.0
|
|
HB2
|
H:HIS65
|
3.2
|
69.2
|
1.0
|
|
CE1
|
H:HIS65
|
3.2
|
69.2
|
1.0
|
|
CG
|
H:HIS65
|
3.3
|
69.2
|
1.0
|
|
HA
|
H:GLU62
|
3.3
|
68.6
|
1.0
|
|
HG11
|
H:VAL110
|
3.4
|
68.3
|
1.0
|
|
OE1
|
H:GLU27
|
3.4
|
68.3
|
1.0
|
|
HE1
|
H:HIS65
|
3.4
|
69.2
|
1.0
|
|
HB3
|
H:HIS65
|
3.4
|
69.2
|
1.0
|
|
CB
|
H:HIS65
|
3.5
|
69.2
|
1.0
|
|
HE21
|
H:GLN141
|
3.6
|
69.3
|
1.0
|
|
HE22
|
H:GLN141
|
3.7
|
69.3
|
1.0
|
|
NE2
|
H:GLN141
|
3.8
|
69.3
|
1.0
|
|
CG
|
H:GLU62
|
3.8
|
68.6
|
1.0
|
|
HG2
|
H:GLU62
|
3.9
|
68.6
|
1.0
|
|
CA
|
H:GLU62
|
4.2
|
68.6
|
1.0
|
|
CG1
|
H:VAL110
|
4.2
|
68.3
|
1.0
|
|
HG12
|
H:VAL110
|
4.3
|
68.3
|
1.0
|
|
NE2
|
H:HIS65
|
4.3
|
69.2
|
1.0
|
|
HB3
|
H:GLU27
|
4.4
|
68.3
|
1.0
|
|
CD2
|
H:HIS65
|
4.4
|
69.2
|
1.0
|
|
HD2
|
H:TYR137
|
4.4
|
69.2
|
1.0
|
|
CB
|
H:GLU62
|
4.4
|
68.6
|
1.0
|
|
HB3
|
H:GLU62
|
4.4
|
68.6
|
1.0
|
|
HG3
|
H:GLU62
|
4.5
|
68.6
|
1.0
|
|
CG
|
H:GLU27
|
4.5
|
68.3
|
1.0
|
|
CD
|
H:GLN141
|
4.5
|
69.3
|
1.0
|
|
HA
|
H:GLU27
|
4.6
|
68.3
|
1.0
|
|
HG2
|
H:GLN141
|
4.7
|
69.3
|
1.0
|
|
HG13
|
H:VAL110
|
4.7
|
68.3
|
1.0
|
|
HE2
|
H:TYR137
|
4.7
|
69.2
|
1.0
|
|
OE2
|
H:GLU107
|
4.7
|
68.2
|
1.0
|
|
HG21
|
H:VAL110
|
4.9
|
68.3
|
1.0
|
|
O
|
H:GLU62
|
4.9
|
68.6
|
1.0
|
|
CB
|
H:GLU27
|
4.9
|
68.3
|
1.0
|
|
HD11
|
H:LEU114
|
4.9
|
68.8
|
1.0
|
|
HG3
|
H:GLU27
|
5.0
|
68.3
|
1.0
|
|
Zinc binding site 9 out
of 24 in 8tu7
Go back to
Zinc Binding Sites List in 8tu7
Zinc binding site 9 out
of 24 in the Cryo-Em Structure of Apoferritin Collected By Epu on Glacios at 2.5 Angstrom Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 9 of Cryo-Em Structure of Apoferritin Collected By Epu on Glacios at 2.5 Angstrom Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Zn202
b:93.0
occ:1.00
|
OE1
|
I:GLU62
|
1.9
|
69.0
|
1.0
|
|
ND1
|
I:HIS65
|
2.3
|
69.6
|
1.0
|
|
OE1
|
I:GLU27
|
2.3
|
68.3
|
1.0
|
|
CD
|
I:GLU62
|
2.5
|
69.0
|
1.0
|
|
OE2
|
I:GLU62
|
2.7
|
69.0
|
1.0
|
|
CE1
|
I:HIS65
|
3.2
|
69.6
|
1.0
|
|
CD
|
I:GLU27
|
3.3
|
68.3
|
1.0
|
|
HA
|
I:GLU62
|
3.3
|
69.0
|
1.0
|
|
CG
|
I:HIS65
|
3.3
|
69.6
|
1.0
|
|
HE1
|
I:HIS65
|
3.3
|
69.6
|
1.0
|
|
HB2
|
I:HIS65
|
3.3
|
69.6
|
1.0
|
|
HG11
|
I:VAL110
|
3.4
|
68.1
|
1.0
|
|
OE2
|
I:GLU27
|
3.5
|
68.3
|
1.0
|
|
HB3
|
I:HIS65
|
3.5
|
69.6
|
1.0
|
|
CB
|
I:HIS65
|
3.6
|
69.6
|
1.0
|
|
OE1
|
I:GLN141
|
3.7
|
68.8
|
1.0
|
|
CG
|
I:GLU62
|
3.7
|
69.0
|
1.0
|
|
HG2
|
I:GLU62
|
3.8
|
69.0
|
1.0
|
|
HE22
|
I:GLN141
|
3.9
|
68.8
|
1.0
|
|
CA
|
I:GLU62
|
4.2
|
69.0
|
1.0
|
|
CG1
|
I:VAL110
|
4.2
|
68.1
|
1.0
|
|
HG12
|
I:VAL110
|
4.3
|
68.1
|
1.0
|
|
NE2
|
I:HIS65
|
4.3
|
69.6
|
1.0
|
|
CB
|
I:GLU62
|
4.4
|
69.0
|
1.0
|
|
CD2
|
I:HIS65
|
4.4
|
69.6
|
1.0
|
|
HB3
|
I:GLU62
|
4.4
|
69.0
|
1.0
|
|
HB3
|
I:GLU27
|
4.4
|
68.3
|
1.0
|
|
HG3
|
I:GLU62
|
4.5
|
69.0
|
1.0
|
|
NE2
|
I:GLN141
|
4.5
|
68.8
|
1.0
|
|
CD
|
I:GLN141
|
4.5
|
68.8
|
1.0
|
|
HD2
|
I:TYR137
|
4.5
|
69.1
|
1.0
|
|
OE2
|
I:GLU107
|
4.6
|
68.4
|
1.0
|
|
HG13
|
I:VAL110
|
4.7
|
68.1
|
1.0
|
|
CG
|
I:GLU27
|
4.7
|
68.3
|
1.0
|
|
HA
|
I:GLU27
|
4.7
|
68.3
|
1.0
|
|
HG21
|
I:VAL110
|
4.8
|
68.1
|
1.0
|
|
HE2
|
I:TYR137
|
4.8
|
69.1
|
1.0
|
|
HD11
|
I:LEU114
|
4.9
|
68.6
|
1.0
|
|
O
|
I:GLU62
|
4.9
|
69.0
|
1.0
|
|
CB
|
I:GLU27
|
5.0
|
68.3
|
1.0
|
|
Zinc binding site 10 out
of 24 in 8tu7
Go back to
Zinc Binding Sites List in 8tu7
Zinc binding site 10 out
of 24 in the Cryo-Em Structure of Apoferritin Collected By Epu on Glacios at 2.5 Angstrom Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 10 of Cryo-Em Structure of Apoferritin Collected By Epu on Glacios at 2.5 Angstrom Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Zn201
b:92.2
occ:1.00
|
OE1
|
J:GLU62
|
1.9
|
69.2
|
1.0
|
|
ND1
|
J:HIS65
|
2.3
|
69.4
|
1.0
|
|
CD
|
J:GLU62
|
2.6
|
69.2
|
1.0
|
|
HB2
|
J:HIS65
|
2.9
|
69.4
|
1.0
|
|
OE2
|
J:GLU62
|
2.9
|
69.2
|
1.0
|
|
OE2
|
J:GLU27
|
3.0
|
68.4
|
1.0
|
|
CG
|
J:HIS65
|
3.1
|
69.4
|
1.0
|
|
OE1
|
J:GLU27
|
3.2
|
68.4
|
1.0
|
|
HA
|
J:GLU62
|
3.2
|
69.2
|
1.0
|
|
HB3
|
J:HIS65
|
3.2
|
69.4
|
1.0
|
|
CD
|
J:GLU27
|
3.2
|
68.4
|
1.0
|
|
CB
|
J:HIS65
|
3.2
|
69.4
|
1.0
|
|
CE1
|
J:HIS65
|
3.4
|
69.4
|
1.0
|
|
HE1
|
J:HIS65
|
3.6
|
69.4
|
1.0
|
|
HG11
|
J:VAL110
|
3.7
|
67.8
|
1.0
|
|
CG
|
J:GLU62
|
3.9
|
69.2
|
1.0
|
|
OE1
|
J:GLN141
|
3.9
|
68.8
|
1.0
|
|
HB3
|
J:GLU27
|
4.0
|
68.4
|
1.0
|
|
HG2
|
J:GLU62
|
4.0
|
69.2
|
1.0
|
|
CA
|
J:GLU62
|
4.1
|
69.2
|
1.0
|
|
HD2
|
J:TYR137
|
4.2
|
69.2
|
1.0
|
|
HE22
|
J:GLN141
|
4.3
|
68.8
|
1.0
|
|
CD2
|
J:HIS65
|
4.3
|
69.4
|
1.0
|
|
NE2
|
J:HIS65
|
4.4
|
69.4
|
1.0
|
|
CG
|
J:GLU27
|
4.4
|
68.4
|
1.0
|
|
HE2
|
J:TYR137
|
4.4
|
69.2
|
1.0
|
|
CB
|
J:GLU62
|
4.5
|
69.2
|
1.0
|
|
CG1
|
J:VAL110
|
4.5
|
67.8
|
1.0
|
|
HG12
|
J:VAL110
|
4.6
|
67.8
|
1.0
|
|
HB3
|
J:GLU62
|
4.6
|
69.2
|
1.0
|
|
HG3
|
J:GLU62
|
4.6
|
69.2
|
1.0
|
|
HG2
|
J:GLU27
|
4.7
|
68.4
|
1.0
|
|
CB
|
J:GLU27
|
4.7
|
68.4
|
1.0
|
|
O
|
J:GLU62
|
4.7
|
69.2
|
1.0
|
|
CA
|
J:HIS65
|
4.7
|
69.4
|
1.0
|
|
O
|
J:GLU61
|
4.8
|
69.2
|
1.0
|
|
CD
|
J:GLN141
|
4.8
|
68.8
|
1.0
|
|
CD2
|
J:TYR137
|
4.8
|
69.2
|
1.0
|
|
NE2
|
J:GLN141
|
4.9
|
68.8
|
1.0
|
|
HA
|
J:GLU27
|
4.9
|
68.4
|
1.0
|
|
HD11
|
J:LEU114
|
4.9
|
68.7
|
1.0
|
|
H
|
J:HIS65
|
4.9
|
69.4
|
1.0
|
|
N
|
J:GLU62
|
4.9
|
69.2
|
1.0
|
|
C
|
J:GLU62
|
4.9
|
69.2
|
1.0
|
|
HG13
|
J:VAL110
|
4.9
|
67.8
|
1.0
|
|
CE2
|
J:TYR137
|
4.9
|
69.2
|
1.0
|
|
Reference:
L.Jia,
E.A.Ruben,
S.K.Olsen,
E.V.Wasmuth.
Cryo-Em Structure of Apoferritin Collected By Epu on Glacios at 2.5 Angstrom Resolution To Be Published.
Page generated: Sun Feb 9 00:48:18 2025
|
