Zinc in PDB 8taf: Autographa Californica Multiple Nucleopolyhedrovirus VP39
Zinc Binding Sites:
The binding sites of Zinc atom in the Autographa Californica Multiple Nucleopolyhedrovirus VP39
(pdb code 8taf). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 8 binding sites of Zinc where determined in the
Autographa Californica Multiple Nucleopolyhedrovirus VP39, PDB code: 8taf:
Jump to Zinc binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Zinc binding site 1 out
of 8 in 8taf
Go back to
Zinc Binding Sites List in 8taf
Zinc binding site 1 out
of 8 in the Autographa Californica Multiple Nucleopolyhedrovirus VP39
 Mono view
 Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Autographa Californica Multiple Nucleopolyhedrovirus VP39 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Zn401
b:113.6
occ:1.00
|
HG
|
J:CYS18
|
1.1
|
53.7
|
1.0
|
HG
|
J:CYS49
|
1.7
|
52.8
|
1.0
|
ND1
|
J:HIS52
|
2.1
|
41.7
|
1.0
|
SG
|
J:CYS49
|
2.3
|
61.9
|
1.0
|
SG
|
J:CYS18
|
2.3
|
53.1
|
1.0
|
SG
|
J:CYS36
|
2.3
|
63.1
|
1.0
|
HB2
|
J:HIS52
|
2.8
|
44.0
|
1.0
|
HG
|
J:CYS36
|
2.8
|
60.4
|
1.0
|
CE1
|
J:HIS52
|
3.0
|
40.9
|
1.0
|
CG
|
J:HIS52
|
3.0
|
32.2
|
1.0
|
HB3
|
J:CYS49
|
3.0
|
52.1
|
1.0
|
HE1
|
J:HIS52
|
3.2
|
45.9
|
1.0
|
H
|
J:CYS49
|
3.2
|
49.7
|
1.0
|
CB
|
J:CYS49
|
3.3
|
48.9
|
1.0
|
CB
|
J:CYS18
|
3.3
|
49.2
|
1.0
|
HA
|
J:CYS36
|
3.3
|
62.0
|
1.0
|
CB
|
J:HIS52
|
3.4
|
34.1
|
1.0
|
HB3
|
J:CYS18
|
3.4
|
53.3
|
1.0
|
HB3
|
J:CYS36
|
3.4
|
60.8
|
1.0
|
CB
|
J:CYS36
|
3.4
|
63.3
|
1.0
|
HB2
|
J:CYS18
|
3.4
|
52.7
|
1.0
|
HB2
|
J:PHE20
|
3.6
|
46.8
|
1.0
|
H
|
J:HIS52
|
3.9
|
44.5
|
1.0
|
CA
|
J:CYS36
|
3.9
|
60.8
|
1.0
|
HB3
|
J:HIS52
|
3.9
|
42.9
|
1.0
|
N
|
J:CYS49
|
4.0
|
43.8
|
1.0
|
HB2
|
J:CYS49
|
4.0
|
51.8
|
1.0
|
NE2
|
J:HIS52
|
4.1
|
45.7
|
1.0
|
CD2
|
J:HIS52
|
4.1
|
34.5
|
1.0
|
CA
|
J:CYS49
|
4.2
|
43.2
|
1.0
|
HB2
|
J:CYS36
|
4.2
|
62.5
|
1.0
|
HB2
|
J:ALA40
|
4.3
|
56.1
|
1.0
|
H
|
J:PHE20
|
4.5
|
46.3
|
1.0
|
N
|
J:HIS52
|
4.5
|
39.5
|
1.0
|
CB
|
J:PHE20
|
4.5
|
46.1
|
1.0
|
H
|
J:SER37
|
4.5
|
58.8
|
1.0
|
CA
|
J:HIS52
|
4.5
|
40.2
|
1.0
|
HB1
|
J:ALA40
|
4.6
|
56.0
|
1.0
|
HB3
|
J:PHE20
|
4.7
|
47.2
|
1.0
|
HA
|
J:ALA21
|
4.7
|
52.8
|
1.0
|
N
|
J:CYS36
|
4.7
|
56.9
|
1.0
|
CA
|
J:CYS18
|
4.8
|
46.5
|
1.0
|
HB2
|
J:ALA21
|
4.8
|
54.0
|
1.0
|
HA
|
J:ILE48
|
4.8
|
42.2
|
1.0
|
HG12
|
J:ILE48
|
4.8
|
42.3
|
1.0
|
HD2
|
J:PHE20
|
4.8
|
46.5
|
1.0
|
C
|
J:PHE20
|
4.8
|
44.0
|
1.0
|
N
|
J:ALA21
|
4.8
|
52.0
|
1.0
|
HE2
|
J:HIS52
|
4.9
|
45.2
|
1.0
|
HG13
|
J:ILE48
|
4.9
|
43.1
|
1.0
|
H
|
J:CYS36
|
4.9
|
61.8
|
1.0
|
C
|
J:CYS49
|
4.9
|
50.1
|
1.0
|
CB
|
J:ALA40
|
4.9
|
51.5
|
1.0
|
H
|
J:ALA21
|
4.9
|
53.3
|
1.0
|
O
|
J:CYS49
|
5.0
|
53.2
|
1.0
|
HD2
|
J:HIS52
|
5.0
|
41.9
|
1.0
|
HB3
|
J:SER34
|
5.0
|
74.4
|
1.0
|
HA
|
J:HIS52
|
5.0
|
44.5
|
1.0
|
HA
|
J:CYS49
|
5.0
|
50.0
|
1.0
|
|
Zinc binding site 2 out
of 8 in 8taf
Go back to
Zinc Binding Sites List in 8taf
Zinc binding site 2 out
of 8 in the Autographa Californica Multiple Nucleopolyhedrovirus VP39
 Mono view
 Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Autographa Californica Multiple Nucleopolyhedrovirus VP39 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
L:Zn401
b:109.3
occ:1.00
|
HG
|
L:CYS18
|
1.1
|
52.0
|
1.0
|
HG
|
L:CYS49
|
2.0
|
50.4
|
1.0
|
ND1
|
L:HIS52
|
2.0
|
44.8
|
1.0
|
SG
|
L:CYS49
|
2.3
|
55.5
|
1.0
|
SG
|
L:CYS36
|
2.3
|
58.5
|
1.0
|
SG
|
L:CYS18
|
2.3
|
43.0
|
1.0
|
HG
|
L:CYS36
|
2.7
|
59.5
|
1.0
|
HB3
|
L:CYS49
|
2.8
|
48.8
|
1.0
|
HB2
|
L:HIS52
|
2.8
|
50.2
|
1.0
|
CE1
|
L:HIS52
|
3.0
|
50.4
|
1.0
|
CG
|
L:HIS52
|
3.1
|
40.1
|
1.0
|
CB
|
L:CYS49
|
3.1
|
44.4
|
1.0
|
HE1
|
L:HIS52
|
3.1
|
51.5
|
1.0
|
CB
|
L:CYS18
|
3.3
|
48.2
|
1.0
|
H
|
L:CYS49
|
3.3
|
48.8
|
1.0
|
HB3
|
L:CYS18
|
3.3
|
51.6
|
1.0
|
HB2
|
L:CYS18
|
3.3
|
51.2
|
1.0
|
CB
|
L:HIS52
|
3.4
|
47.4
|
1.0
|
CB
|
L:CYS36
|
3.5
|
62.8
|
1.0
|
HB3
|
L:CYS36
|
3.5
|
60.6
|
1.0
|
HA
|
L:CYS36
|
3.5
|
61.6
|
1.0
|
H
|
L:HIS52
|
3.7
|
49.8
|
1.0
|
HB2
|
L:PHE20
|
3.8
|
52.5
|
1.0
|
HB2
|
L:CYS49
|
3.8
|
49.4
|
1.0
|
N
|
L:CYS49
|
4.0
|
42.1
|
1.0
|
HB3
|
L:HIS52
|
4.0
|
50.0
|
1.0
|
CA
|
L:CYS36
|
4.0
|
62.0
|
1.0
|
NE2
|
L:HIS52
|
4.1
|
56.8
|
1.0
|
CA
|
L:CYS49
|
4.1
|
37.4
|
1.0
|
CD2
|
L:HIS52
|
4.2
|
48.1
|
1.0
|
HB2
|
L:ALA40
|
4.2
|
58.7
|
1.0
|
HB2
|
L:CYS36
|
4.3
|
61.8
|
1.0
|
N
|
L:HIS52
|
4.4
|
45.8
|
1.0
|
HG13
|
L:ILE48
|
4.4
|
45.4
|
1.0
|
CA
|
L:HIS52
|
4.5
|
46.2
|
1.0
|
HB1
|
L:ALA40
|
4.6
|
58.9
|
1.0
|
H
|
L:PHE20
|
4.6
|
52.7
|
1.0
|
H
|
L:SER37
|
4.7
|
59.0
|
1.0
|
O
|
L:PRO35
|
4.7
|
69.4
|
1.0
|
CB
|
L:PHE20
|
4.7
|
52.2
|
1.0
|
CA
|
L:CYS18
|
4.7
|
48.4
|
1.0
|
HA
|
L:ALA21
|
4.8
|
52.7
|
1.0
|
C
|
L:CYS49
|
4.8
|
48.7
|
1.0
|
HD2
|
L:PHE20
|
4.9
|
52.2
|
1.0
|
HB2
|
L:ALA21
|
4.9
|
53.4
|
1.0
|
CB
|
L:ALA40
|
4.9
|
54.9
|
1.0
|
C
|
L:PHE20
|
4.9
|
54.4
|
1.0
|
HE2
|
L:HIS52
|
4.9
|
51.5
|
1.0
|
HA
|
L:CYS49
|
4.9
|
47.2
|
1.0
|
HA
|
L:ILE48
|
4.9
|
44.2
|
1.0
|
HG
|
L:SER34
|
4.9
|
75.6
|
1.0
|
HB3
|
L:ASN51
|
4.9
|
52.5
|
1.0
|
N
|
L:CYS36
|
4.9
|
62.1
|
1.0
|
N
|
L:ALA21
|
5.0
|
51.8
|
1.0
|
HA
|
L:HIS52
|
5.0
|
50.1
|
1.0
|
O
|
L:CYS49
|
5.0
|
50.7
|
1.0
|
|
Zinc binding site 3 out
of 8 in 8taf
Go back to
Zinc Binding Sites List in 8taf
Zinc binding site 3 out
of 8 in the Autographa Californica Multiple Nucleopolyhedrovirus VP39
 Mono view
 Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 3 of Autographa Californica Multiple Nucleopolyhedrovirus VP39 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
M:Zn401
b:119.1
occ:1.00
|
HG
|
M:CYS18
|
1.1
|
53.8
|
1.0
|
ND1
|
M:HIS52
|
2.1
|
50.5
|
1.0
|
SG
|
M:CYS36
|
2.3
|
66.4
|
1.0
|
SG
|
M:CYS49
|
2.3
|
67.4
|
1.0
|
SG
|
M:CYS18
|
2.3
|
52.9
|
1.0
|
HB3
|
M:CYS49
|
2.6
|
49.8
|
1.0
|
CE1
|
M:HIS52
|
2.9
|
52.2
|
1.0
|
HB2
|
M:HIS52
|
2.9
|
49.9
|
1.0
|
CB
|
M:CYS49
|
3.0
|
40.5
|
1.0
|
CG
|
M:HIS52
|
3.0
|
45.6
|
1.0
|
HE1
|
M:HIS52
|
3.1
|
52.5
|
1.0
|
H
|
M:CYS49
|
3.2
|
50.9
|
1.0
|
CB
|
M:CYS18
|
3.3
|
48.5
|
1.0
|
HB3
|
M:CYS18
|
3.3
|
53.4
|
1.0
|
HB2
|
M:CYS18
|
3.3
|
53.0
|
1.0
|
HA
|
M:CYS36
|
3.4
|
64.0
|
1.0
|
CB
|
M:HIS52
|
3.5
|
46.8
|
1.0
|
H
|
M:HIS52
|
3.6
|
50.4
|
1.0
|
HB2
|
M:CYS49
|
3.6
|
50.9
|
1.0
|
CB
|
M:CYS36
|
3.8
|
62.6
|
1.0
|
HB2
|
M:PHE20
|
3.8
|
49.6
|
1.0
|
N
|
M:CYS49
|
3.9
|
43.8
|
1.0
|
NE2
|
M:HIS52
|
3.9
|
52.2
|
1.0
|
CA
|
M:CYS49
|
4.0
|
40.9
|
1.0
|
CD2
|
M:HIS52
|
4.0
|
46.7
|
1.0
|
CA
|
M:CYS36
|
4.1
|
62.8
|
1.0
|
HB3
|
M:HIS52
|
4.1
|
50.2
|
1.0
|
HB2
|
M:ALA40
|
4.2
|
60.5
|
1.0
|
HB3
|
M:CYS36
|
4.2
|
63.2
|
1.0
|
N
|
M:HIS52
|
4.3
|
49.2
|
1.0
|
H
|
M:SER37
|
4.4
|
57.7
|
1.0
|
HB2
|
M:CYS36
|
4.4
|
63.9
|
1.0
|
O
|
M:PRO35
|
4.5
|
79.5
|
1.0
|
CA
|
M:HIS52
|
4.5
|
44.9
|
1.0
|
H
|
M:PHE20
|
4.6
|
49.7
|
1.0
|
HE2
|
M:HIS52
|
4.7
|
51.6
|
1.0
|
CB
|
M:PHE20
|
4.7
|
46.0
|
1.0
|
C
|
M:CYS49
|
4.7
|
47.5
|
1.0
|
CA
|
M:CYS18
|
4.7
|
50.9
|
1.0
|
HA
|
M:CYS49
|
4.8
|
50.2
|
1.0
|
HB2
|
M:ASN51
|
4.8
|
51.2
|
1.0
|
HB1
|
M:ALA40
|
4.8
|
60.5
|
1.0
|
O
|
M:CYS49
|
4.8
|
55.7
|
1.0
|
HD2
|
M:PHE20
|
4.8
|
50.2
|
1.0
|
HG12
|
M:ILE48
|
4.8
|
42.8
|
1.0
|
HG13
|
M:ILE48
|
4.9
|
43.1
|
1.0
|
HD2
|
M:HIS52
|
4.9
|
49.1
|
1.0
|
HB3
|
M:PHE20
|
4.9
|
50.6
|
1.0
|
CB
|
M:ALA40
|
4.9
|
58.8
|
1.0
|
HA
|
M:ILE48
|
4.9
|
43.0
|
1.0
|
HB2
|
M:ALA21
|
5.0
|
52.4
|
1.0
|
HA
|
M:ALA21
|
5.0
|
52.1
|
1.0
|
N
|
M:SER37
|
5.0
|
58.0
|
1.0
|
HB3
|
M:ASN51
|
5.0
|
51.4
|
1.0
|
HA
|
M:CYS18
|
5.0
|
53.9
|
1.0
|
HA
|
M:HIS52
|
5.0
|
50.1
|
1.0
|
|
Zinc binding site 4 out
of 8 in 8taf
Go back to
Zinc Binding Sites List in 8taf
Zinc binding site 4 out
of 8 in the Autographa Californica Multiple Nucleopolyhedrovirus VP39
 Mono view
 Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 4 of Autographa Californica Multiple Nucleopolyhedrovirus VP39 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
N:Zn401
b:114.6
occ:1.00
|
HG
|
N:CYS18
|
1.1
|
52.8
|
1.0
|
ND1
|
N:HIS52
|
2.0
|
41.8
|
1.0
|
SG
|
N:CYS49
|
2.3
|
57.2
|
1.0
|
SG
|
N:CYS36
|
2.3
|
61.3
|
1.0
|
SG
|
N:CYS18
|
2.3
|
44.5
|
1.0
|
HB2
|
N:HIS52
|
2.8
|
47.9
|
1.0
|
HB3
|
N:CYS49
|
3.0
|
50.7
|
1.0
|
CE1
|
N:HIS52
|
3.0
|
46.1
|
1.0
|
CG
|
N:HIS52
|
3.1
|
44.5
|
1.0
|
HE1
|
N:HIS52
|
3.2
|
50.4
|
1.0
|
H
|
N:CYS49
|
3.2
|
50.3
|
1.0
|
CB
|
N:CYS49
|
3.2
|
45.0
|
1.0
|
CB
|
N:CYS18
|
3.3
|
52.7
|
1.0
|
HB2
|
N:CYS18
|
3.3
|
52.8
|
1.0
|
HB3
|
N:CYS18
|
3.3
|
53.2
|
1.0
|
HA
|
N:CYS36
|
3.4
|
64.8
|
1.0
|
CB
|
N:HIS52
|
3.4
|
44.6
|
1.0
|
CB
|
N:CYS36
|
3.6
|
65.8
|
1.0
|
HB2
|
N:PHE20
|
3.7
|
50.7
|
1.0
|
H
|
N:HIS52
|
3.8
|
47.5
|
1.0
|
HB3
|
N:CYS36
|
3.8
|
63.6
|
1.0
|
N
|
N:CYS49
|
3.9
|
47.0
|
1.0
|
HB2
|
N:CYS49
|
4.0
|
51.2
|
1.0
|
HB3
|
N:HIS52
|
4.0
|
47.3
|
1.0
|
CA
|
N:CYS36
|
4.0
|
63.9
|
1.0
|
NE2
|
N:HIS52
|
4.1
|
49.9
|
1.0
|
CA
|
N:CYS49
|
4.2
|
46.1
|
1.0
|
HB2
|
N:ALA40
|
4.2
|
59.2
|
1.0
|
CD2
|
N:HIS52
|
4.2
|
45.3
|
1.0
|
HG13
|
N:ILE48
|
4.2
|
46.1
|
1.0
|
HB2
|
N:CYS36
|
4.4
|
65.1
|
1.0
|
N
|
N:HIS52
|
4.4
|
43.4
|
1.0
|
O
|
N:PRO35
|
4.5
|
82.1
|
1.0
|
H
|
N:SER37
|
4.5
|
58.1
|
1.0
|
CA
|
N:HIS52
|
4.6
|
43.5
|
1.0
|
HB1
|
N:ALA40
|
4.6
|
58.5
|
1.0
|
CB
|
N:PHE20
|
4.6
|
52.7
|
1.0
|
H
|
N:PHE20
|
4.6
|
49.4
|
1.0
|
CA
|
N:CYS18
|
4.7
|
47.2
|
1.0
|
HB3
|
N:PHE20
|
4.8
|
50.3
|
1.0
|
HG12
|
N:ILE48
|
4.8
|
45.4
|
1.0
|
HA
|
N:ILE48
|
4.8
|
45.0
|
1.0
|
HD2
|
N:PHE20
|
4.8
|
49.2
|
1.0
|
CB
|
N:ALA40
|
4.9
|
57.3
|
1.0
|
C
|
N:CYS49
|
4.9
|
50.7
|
1.0
|
HE2
|
N:HIS52
|
4.9
|
49.5
|
1.0
|
HA
|
N:ALA21
|
4.9
|
51.5
|
1.0
|
C
|
N:PHE20
|
4.9
|
47.7
|
1.0
|
HA
|
N:CYS49
|
4.9
|
50.3
|
1.0
|
HA
|
N:CYS18
|
5.0
|
52.3
|
1.0
|
CG1
|
N:ILE48
|
5.0
|
47.4
|
1.0
|
O
|
N:CYS49
|
5.0
|
54.9
|
1.0
|
N
|
N:CYS36
|
5.0
|
65.3
|
1.0
|
|
Zinc binding site 5 out
of 8 in 8taf
Go back to
Zinc Binding Sites List in 8taf
Zinc binding site 5 out
of 8 in the Autographa Californica Multiple Nucleopolyhedrovirus VP39
 Mono view
 Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 5 of Autographa Californica Multiple Nucleopolyhedrovirus VP39 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
O:Zn401
b:99.5
occ:1.00
|
HG
|
O:CYS18
|
1.2
|
51.8
|
1.0
|
ND1
|
O:HIS52
|
2.1
|
40.2
|
1.0
|
SG
|
O:CYS49
|
2.3
|
41.3
|
1.0
|
SG
|
O:CYS18
|
2.3
|
50.7
|
1.0
|
SG
|
O:CYS36
|
2.3
|
66.7
|
1.0
|
CE1
|
O:HIS52
|
2.7
|
47.0
|
1.0
|
HE1
|
O:HIS52
|
2.9
|
47.8
|
1.0
|
CG
|
O:HIS52
|
3.0
|
38.9
|
1.0
|
HG
|
O:CYS36
|
3.0
|
61.4
|
1.0
|
HA
|
O:CYS36
|
3.0
|
63.7
|
1.0
|
HB2
|
O:HIS52
|
3.1
|
45.9
|
1.0
|
HB3
|
O:CYS18
|
3.2
|
51.3
|
1.0
|
CB
|
O:CYS18
|
3.2
|
46.4
|
1.0
|
HG
|
O:CYS49
|
3.3
|
46.5
|
1.0
|
HB2
|
O:CYS18
|
3.3
|
50.5
|
1.0
|
H
|
O:CYS49
|
3.3
|
45.2
|
1.0
|
CB
|
O:CYS36
|
3.4
|
61.7
|
1.0
|
HB3
|
O:CYS49
|
3.4
|
46.9
|
1.0
|
HB3
|
O:CYS36
|
3.5
|
62.8
|
1.0
|
CB
|
O:CYS49
|
3.5
|
43.8
|
1.0
|
HB2
|
O:PHE20
|
3.6
|
49.6
|
1.0
|
CB
|
O:HIS52
|
3.6
|
46.0
|
1.0
|
CA
|
O:CYS36
|
3.7
|
59.1
|
1.0
|
NE2
|
O:HIS52
|
3.7
|
45.8
|
1.0
|
CD2
|
O:HIS52
|
3.9
|
35.6
|
1.0
|
H
|
O:HIS52
|
4.0
|
45.0
|
1.0
|
N
|
O:CYS49
|
4.1
|
41.5
|
1.0
|
HB3
|
O:HIS52
|
4.1
|
45.2
|
1.0
|
HB2
|
O:CYS36
|
4.2
|
63.8
|
1.0
|
HB2
|
O:CYS49
|
4.2
|
48.3
|
1.0
|
HB2
|
O:ALA40
|
4.4
|
55.2
|
1.0
|
O
|
O:CYS36
|
4.4
|
71.9
|
1.0
|
CA
|
O:CYS49
|
4.4
|
31.5
|
1.0
|
H
|
O:PHE20
|
4.4
|
49.3
|
1.0
|
HE2
|
O:HIS52
|
4.4
|
46.4
|
1.0
|
HG13
|
O:ILE48
|
4.4
|
43.1
|
1.0
|
CB
|
O:PHE20
|
4.4
|
48.6
|
1.0
|
O
|
O:PRO35
|
4.5
|
77.9
|
1.0
|
C
|
O:CYS36
|
4.5
|
60.8
|
1.0
|
HB3
|
O:PHE20
|
4.6
|
49.8
|
1.0
|
HA
|
O:ALA21
|
4.6
|
48.3
|
1.0
|
C
|
O:PHE20
|
4.6
|
45.1
|
1.0
|
HB2
|
O:ALA21
|
4.7
|
49.1
|
1.0
|
N
|
O:HIS52
|
4.7
|
39.9
|
1.0
|
CA
|
O:CYS18
|
4.7
|
44.8
|
1.0
|
HD2
|
O:HIS52
|
4.7
|
43.9
|
1.0
|
N
|
O:ALA21
|
4.7
|
40.2
|
1.0
|
N
|
O:CYS36
|
4.7
|
65.3
|
1.0
|
CA
|
O:HIS52
|
4.7
|
37.4
|
1.0
|
HA
|
O:ILE48
|
4.8
|
41.7
|
1.0
|
O
|
O:PHE20
|
4.9
|
47.8
|
1.0
|
H
|
O:ALA21
|
4.9
|
47.7
|
1.0
|
HD2
|
O:PHE20
|
4.9
|
48.6
|
1.0
|
HB1
|
O:ALA40
|
4.9
|
56.1
|
1.0
|
OD1
|
O:ASN16
|
4.9
|
57.0
|
1.0
|
CA
|
O:PHE20
|
4.9
|
47.8
|
1.0
|
N
|
O:PHE20
|
5.0
|
45.4
|
1.0
|
|
Zinc binding site 6 out
of 8 in 8taf
Go back to
Zinc Binding Sites List in 8taf
Zinc binding site 6 out
of 8 in the Autographa Californica Multiple Nucleopolyhedrovirus VP39
 Mono view
 Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 6 of Autographa Californica Multiple Nucleopolyhedrovirus VP39 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
P:Zn401
b:116.5
occ:1.00
|
HG
|
P:CYS18
|
1.1
|
51.6
|
1.0
|
ND1
|
P:HIS52
|
2.1
|
51.3
|
1.0
|
SG
|
P:CYS49
|
2.3
|
58.3
|
1.0
|
SG
|
P:CYS36
|
2.3
|
67.8
|
1.0
|
SG
|
P:CYS18
|
2.3
|
53.4
|
1.0
|
HB3
|
P:CYS49
|
2.6
|
50.3
|
1.0
|
HB2
|
P:HIS52
|
2.7
|
51.1
|
1.0
|
CG
|
P:HIS52
|
2.9
|
43.2
|
1.0
|
CE1
|
P:HIS52
|
2.9
|
52.4
|
1.0
|
CB
|
P:CYS49
|
3.0
|
46.5
|
1.0
|
H
|
P:CYS49
|
3.2
|
50.2
|
1.0
|
HE1
|
P:HIS52
|
3.2
|
52.6
|
1.0
|
CB
|
P:CYS18
|
3.3
|
45.3
|
1.0
|
CB
|
P:HIS52
|
3.3
|
48.9
|
1.0
|
HB2
|
P:CYS18
|
3.3
|
50.4
|
1.0
|
HB3
|
P:CYS18
|
3.3
|
50.8
|
1.0
|
HA
|
P:CYS36
|
3.4
|
65.9
|
1.0
|
H
|
P:HIS52
|
3.6
|
51.0
|
1.0
|
CB
|
P:CYS36
|
3.6
|
68.2
|
1.0
|
HB2
|
P:CYS49
|
3.7
|
51.0
|
1.0
|
HB3
|
P:CYS36
|
3.8
|
65.0
|
1.0
|
HB2
|
P:PHE20
|
3.8
|
50.0
|
1.0
|
N
|
P:CYS49
|
3.9
|
47.5
|
1.0
|
HB3
|
P:HIS52
|
3.9
|
50.9
|
1.0
|
NE2
|
P:HIS52
|
3.9
|
56.8
|
1.0
|
CD2
|
P:HIS52
|
4.0
|
45.7
|
1.0
|
CA
|
P:CYS49
|
4.0
|
41.1
|
1.0
|
CA
|
P:CYS36
|
4.0
|
64.9
|
1.0
|
HB2
|
P:ALA40
|
4.2
|
58.0
|
1.0
|
N
|
P:HIS52
|
4.3
|
47.2
|
1.0
|
HB2
|
P:CYS36
|
4.4
|
66.3
|
1.0
|
CA
|
P:HIS52
|
4.4
|
50.0
|
1.0
|
H
|
P:SER37
|
4.4
|
57.6
|
1.0
|
O
|
P:PRO35
|
4.4
|
76.4
|
1.0
|
HG13
|
P:ILE48
|
4.5
|
42.1
|
1.0
|
C
|
P:CYS49
|
4.7
|
51.7
|
1.0
|
CB
|
P:PHE20
|
4.7
|
46.8
|
1.0
|
HE2
|
P:HIS52
|
4.7
|
53.3
|
1.0
|
H
|
P:PHE20
|
4.7
|
49.8
|
1.0
|
CA
|
P:CYS18
|
4.7
|
42.7
|
1.0
|
HA
|
P:CYS49
|
4.8
|
48.7
|
1.0
|
O
|
P:CYS49
|
4.8
|
51.2
|
1.0
|
HD2
|
P:HIS52
|
4.8
|
50.7
|
1.0
|
HB1
|
P:ALA40
|
4.8
|
57.8
|
1.0
|
HB3
|
P:PHE20
|
4.9
|
50.0
|
1.0
|
HG12
|
P:ILE48
|
4.9
|
42.8
|
1.0
|
HB2
|
P:ASN51
|
4.9
|
50.9
|
1.0
|
HA
|
P:HIS52
|
4.9
|
51.5
|
1.0
|
HA
|
P:ILE48
|
4.9
|
41.2
|
1.0
|
HA
|
P:ALA21
|
4.9
|
51.7
|
1.0
|
HD2
|
P:PHE20
|
4.9
|
49.8
|
1.0
|
N
|
P:CYS36
|
5.0
|
67.7
|
1.0
|
C
|
P:PHE20
|
5.0
|
51.0
|
1.0
|
CB
|
P:ALA40
|
5.0
|
57.0
|
1.0
|
HA
|
P:CYS18
|
5.0
|
50.9
|
1.0
|
|
Zinc binding site 7 out
of 8 in 8taf
Go back to
Zinc Binding Sites List in 8taf
Zinc binding site 7 out
of 8 in the Autographa Californica Multiple Nucleopolyhedrovirus VP39
 Mono view
 Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 7 of Autographa Californica Multiple Nucleopolyhedrovirus VP39 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
Q:Zn401
b:111.7
occ:1.00
|
HG
|
Q:CYS18
|
1.1
|
52.8
|
1.0
|
HG
|
Q:CYS49
|
1.7
|
50.9
|
1.0
|
ND1
|
Q:HIS52
|
2.1
|
46.1
|
1.0
|
SG
|
Q:CYS49
|
2.3
|
63.3
|
1.0
|
SG
|
Q:CYS36
|
2.3
|
60.5
|
1.0
|
SG
|
Q:CYS18
|
2.3
|
57.6
|
1.0
|
CE1
|
Q:HIS52
|
2.8
|
40.7
|
1.0
|
HG
|
Q:CYS36
|
3.0
|
57.8
|
1.0
|
CG
|
Q:HIS52
|
3.0
|
41.9
|
1.0
|
HE1
|
Q:HIS52
|
3.0
|
46.3
|
1.0
|
HB2
|
Q:HIS52
|
3.0
|
45.5
|
1.0
|
HB3
|
Q:CYS49
|
3.1
|
48.2
|
1.0
|
HB3
|
Q:CYS18
|
3.2
|
52.2
|
1.0
|
CB
|
Q:CYS18
|
3.2
|
47.9
|
1.0
|
HB2
|
Q:CYS18
|
3.3
|
51.6
|
1.0
|
H
|
Q:CYS49
|
3.3
|
47.8
|
1.0
|
HA
|
Q:CYS36
|
3.3
|
58.5
|
1.0
|
CB
|
Q:CYS49
|
3.3
|
42.8
|
1.0
|
CB
|
Q:HIS52
|
3.5
|
44.0
|
1.0
|
HB2
|
Q:PHE20
|
3.6
|
47.5
|
1.0
|
CB
|
Q:CYS36
|
3.6
|
57.9
|
1.0
|
HB3
|
Q:CYS36
|
3.8
|
57.9
|
1.0
|
NE2
|
Q:HIS52
|
3.8
|
41.0
|
1.0
|
H
|
Q:HIS52
|
3.8
|
45.5
|
1.0
|
CD2
|
Q:HIS52
|
3.9
|
36.6
|
1.0
|
CA
|
Q:CYS36
|
4.0
|
55.1
|
1.0
|
N
|
Q:CYS49
|
4.0
|
45.9
|
1.0
|
HB2
|
Q:CYS49
|
4.1
|
48.8
|
1.0
|
HG
|
Q:SER34
|
4.1
|
69.8
|
1.0
|
HB3
|
Q:HIS52
|
4.1
|
44.9
|
1.0
|
CA
|
Q:CYS49
|
4.3
|
45.0
|
1.0
|
HA
|
Q:ALA21
|
4.4
|
50.0
|
1.0
|
HB2
|
Q:CYS36
|
4.4
|
59.0
|
1.0
|
HB2
|
Q:ALA40
|
4.4
|
57.5
|
1.0
|
N
|
Q:HIS52
|
4.5
|
41.6
|
1.0
|
CB
|
Q:PHE20
|
4.5
|
49.3
|
1.0
|
HE2
|
Q:HIS52
|
4.5
|
45.7
|
1.0
|
OG
|
Q:SER34
|
4.5
|
73.2
|
1.0
|
H
|
Q:PHE20
|
4.5
|
47.5
|
1.0
|
H
|
Q:SER37
|
4.5
|
54.0
|
1.0
|
CA
|
Q:HIS52
|
4.6
|
38.6
|
1.0
|
C
|
Q:PHE20
|
4.6
|
46.4
|
1.0
|
CA
|
Q:CYS18
|
4.7
|
44.0
|
1.0
|
N
|
Q:ALA21
|
4.7
|
51.2
|
1.0
|
HB3
|
Q:PHE20
|
4.7
|
48.1
|
1.0
|
HD2
|
Q:HIS52
|
4.7
|
43.9
|
1.0
|
HD2
|
Q:PHE20
|
4.7
|
46.7
|
1.0
|
N
|
Q:CYS36
|
4.8
|
58.7
|
1.0
|
HA
|
Q:ILE48
|
4.8
|
40.9
|
1.0
|
HB2
|
Q:ALA21
|
4.8
|
51.7
|
1.0
|
HB1
|
Q:ALA40
|
4.8
|
57.0
|
1.0
|
HG12
|
Q:ILE48
|
4.8
|
41.2
|
1.0
|
O
|
Q:PHE20
|
4.9
|
45.4
|
1.0
|
H
|
Q:ALA21
|
4.9
|
50.9
|
1.0
|
HB2
|
Q:ASN51
|
4.9
|
50.0
|
1.0
|
HG13
|
Q:ILE48
|
4.9
|
42.6
|
1.0
|
CA
|
Q:PHE20
|
5.0
|
46.4
|
1.0
|
HA
|
Q:CYS18
|
5.0
|
51.7
|
1.0
|
H
|
Q:CYS36
|
5.0
|
59.5
|
1.0
|
CA
|
Q:ALA21
|
5.0
|
45.0
|
1.0
|
C
|
Q:CYS49
|
5.0
|
46.2
|
1.0
|
OD1
|
Q:ASN16
|
5.0
|
60.2
|
1.0
|
|
Zinc binding site 8 out
of 8 in 8taf
Go back to
Zinc Binding Sites List in 8taf
Zinc binding site 8 out
of 8 in the Autographa Californica Multiple Nucleopolyhedrovirus VP39
 Mono view
 Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 8 of Autographa Californica Multiple Nucleopolyhedrovirus VP39 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
R:Zn401
b:111.8
occ:1.00
|
HG
|
R:CYS18
|
1.2
|
43.9
|
1.0
|
HG
|
R:CYS49
|
1.8
|
41.3
|
1.0
|
ND1
|
R:HIS52
|
2.1
|
41.5
|
1.0
|
SG
|
R:CYS49
|
2.3
|
43.4
|
1.0
|
SG
|
R:CYS36
|
2.3
|
54.7
|
1.0
|
SG
|
R:CYS18
|
2.3
|
47.4
|
1.0
|
CE1
|
R:HIS52
|
2.9
|
39.5
|
1.0
|
HB2
|
R:HIS52
|
2.9
|
37.9
|
1.0
|
HG
|
R:CYS36
|
2.9
|
50.9
|
1.0
|
CG
|
R:HIS52
|
3.0
|
32.0
|
1.0
|
HB3
|
R:CYS49
|
3.0
|
40.5
|
1.0
|
HE1
|
R:HIS52
|
3.0
|
40.5
|
1.0
|
HB3
|
R:CYS18
|
3.1
|
43.4
|
1.0
|
CB
|
R:CYS18
|
3.2
|
35.4
|
1.0
|
HB2
|
R:CYS18
|
3.2
|
43.0
|
1.0
|
H
|
R:CYS49
|
3.2
|
38.5
|
1.0
|
CB
|
R:CYS49
|
3.3
|
34.8
|
1.0
|
HA
|
R:CYS36
|
3.4
|
52.5
|
1.0
|
CB
|
R:HIS52
|
3.5
|
29.9
|
1.0
|
CB
|
R:CYS36
|
3.6
|
55.1
|
1.0
|
HB2
|
R:PHE20
|
3.6
|
37.1
|
1.0
|
HB3
|
R:CYS36
|
3.8
|
52.4
|
1.0
|
H
|
R:HIS52
|
3.9
|
38.3
|
1.0
|
NE2
|
R:HIS52
|
3.9
|
39.3
|
1.0
|
N
|
R:CYS49
|
4.0
|
32.3
|
1.0
|
CD2
|
R:HIS52
|
4.0
|
34.7
|
1.0
|
CA
|
R:CYS36
|
4.0
|
46.6
|
1.0
|
HB2
|
R:CYS49
|
4.0
|
39.8
|
1.0
|
HB3
|
R:HIS52
|
4.0
|
37.2
|
1.0
|
CA
|
R:CYS49
|
4.2
|
35.5
|
1.0
|
HB2
|
R:ALA40
|
4.3
|
48.1
|
1.0
|
HB2
|
R:CYS36
|
4.4
|
54.9
|
1.0
|
HA
|
R:ALA21
|
4.4
|
45.1
|
1.0
|
N
|
R:HIS52
|
4.5
|
35.1
|
1.0
|
H
|
R:PHE20
|
4.5
|
36.5
|
1.0
|
CB
|
R:PHE20
|
4.5
|
35.8
|
1.0
|
CA
|
R:HIS52
|
4.6
|
29.2
|
1.0
|
H
|
R:SER37
|
4.6
|
47.8
|
1.0
|
CA
|
R:CYS18
|
4.6
|
37.8
|
1.0
|
HE2
|
R:HIS52
|
4.6
|
38.3
|
1.0
|
HG13
|
R:ILE48
|
4.7
|
33.6
|
1.0
|
C
|
R:PHE20
|
4.7
|
36.9
|
1.0
|
HB3
|
R:PHE20
|
4.8
|
38.4
|
1.0
|
HD2
|
R:PHE20
|
4.8
|
36.6
|
1.0
|
HG12
|
R:ILE48
|
4.8
|
33.3
|
1.0
|
HA
|
R:ILE48
|
4.8
|
32.5
|
1.0
|
HB1
|
R:ALA40
|
4.8
|
48.1
|
1.0
|
N
|
R:CYS36
|
4.8
|
51.5
|
1.0
|
HD2
|
R:HIS52
|
4.8
|
35.8
|
1.0
|
N
|
R:ALA21
|
4.8
|
47.4
|
1.0
|
C
|
R:CYS49
|
4.9
|
38.6
|
1.0
|
O
|
R:PHE20
|
4.9
|
36.5
|
1.0
|
HA
|
R:CYS18
|
4.9
|
43.9
|
1.0
|
H
|
R:CYS36
|
5.0
|
54.5
|
1.0
|
HA
|
R:CYS49
|
5.0
|
38.6
|
1.0
|
|
Reference:
F.M.C.Benning,
S.Jenni,
C.Y.Garcia,
T.H.Nguyen,
X.Zhang,
L.H.Chao.
Helical Reconstruction of VP39 Reveals Principles For Baculovirus Nucleocapsid Assembly Nat Commun V. 15 250 2024.
ISSN: ESSN 2041-1723
DOI: 10.1038/S41467-023-44596-Y
Page generated: Fri Aug 22 13:40:52 2025
|