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Zinc in PDB 8taf: Autographa Californica Multiple Nucleopolyhedrovirus VP39

Zinc Binding Sites:

The binding sites of Zinc atom in the Autographa Californica Multiple Nucleopolyhedrovirus VP39 (pdb code 8taf). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 8 binding sites of Zinc where determined in the Autographa Californica Multiple Nucleopolyhedrovirus VP39, PDB code: 8taf:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Zinc binding site 1 out of 8 in 8taf

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Zinc binding site 1 out of 8 in the Autographa Californica Multiple Nucleopolyhedrovirus VP39


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Autographa Californica Multiple Nucleopolyhedrovirus VP39 within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Zn401

b:113.6
occ:1.00
HG J:CYS18 1.1 53.7 1.0
HG J:CYS49 1.7 52.8 1.0
ND1 J:HIS52 2.1 41.7 1.0
SG J:CYS49 2.3 61.9 1.0
SG J:CYS18 2.3 53.1 1.0
SG J:CYS36 2.3 63.1 1.0
HB2 J:HIS52 2.8 44.0 1.0
HG J:CYS36 2.8 60.4 1.0
CE1 J:HIS52 3.0 40.9 1.0
CG J:HIS52 3.0 32.2 1.0
HB3 J:CYS49 3.0 52.1 1.0
HE1 J:HIS52 3.2 45.9 1.0
H J:CYS49 3.2 49.7 1.0
CB J:CYS49 3.3 48.9 1.0
CB J:CYS18 3.3 49.2 1.0
HA J:CYS36 3.3 62.0 1.0
CB J:HIS52 3.4 34.1 1.0
HB3 J:CYS18 3.4 53.3 1.0
HB3 J:CYS36 3.4 60.8 1.0
CB J:CYS36 3.4 63.3 1.0
HB2 J:CYS18 3.4 52.7 1.0
HB2 J:PHE20 3.6 46.8 1.0
H J:HIS52 3.9 44.5 1.0
CA J:CYS36 3.9 60.8 1.0
HB3 J:HIS52 3.9 42.9 1.0
N J:CYS49 4.0 43.8 1.0
HB2 J:CYS49 4.0 51.8 1.0
NE2 J:HIS52 4.1 45.7 1.0
CD2 J:HIS52 4.1 34.5 1.0
CA J:CYS49 4.2 43.2 1.0
HB2 J:CYS36 4.2 62.5 1.0
HB2 J:ALA40 4.3 56.1 1.0
H J:PHE20 4.5 46.3 1.0
N J:HIS52 4.5 39.5 1.0
CB J:PHE20 4.5 46.1 1.0
H J:SER37 4.5 58.8 1.0
CA J:HIS52 4.5 40.2 1.0
HB1 J:ALA40 4.6 56.0 1.0
HB3 J:PHE20 4.7 47.2 1.0
HA J:ALA21 4.7 52.8 1.0
N J:CYS36 4.7 56.9 1.0
CA J:CYS18 4.8 46.5 1.0
HB2 J:ALA21 4.8 54.0 1.0
HA J:ILE48 4.8 42.2 1.0
HG12 J:ILE48 4.8 42.3 1.0
HD2 J:PHE20 4.8 46.5 1.0
C J:PHE20 4.8 44.0 1.0
N J:ALA21 4.8 52.0 1.0
HE2 J:HIS52 4.9 45.2 1.0
HG13 J:ILE48 4.9 43.1 1.0
H J:CYS36 4.9 61.8 1.0
C J:CYS49 4.9 50.1 1.0
CB J:ALA40 4.9 51.5 1.0
H J:ALA21 4.9 53.3 1.0
O J:CYS49 5.0 53.2 1.0
HD2 J:HIS52 5.0 41.9 1.0
HB3 J:SER34 5.0 74.4 1.0
HA J:HIS52 5.0 44.5 1.0
HA J:CYS49 5.0 50.0 1.0

Zinc binding site 2 out of 8 in 8taf

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Zinc binding site 2 out of 8 in the Autographa Californica Multiple Nucleopolyhedrovirus VP39


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Autographa Californica Multiple Nucleopolyhedrovirus VP39 within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Zn401

b:109.3
occ:1.00
HG L:CYS18 1.1 52.0 1.0
HG L:CYS49 2.0 50.4 1.0
ND1 L:HIS52 2.0 44.8 1.0
SG L:CYS49 2.3 55.5 1.0
SG L:CYS36 2.3 58.5 1.0
SG L:CYS18 2.3 43.0 1.0
HG L:CYS36 2.7 59.5 1.0
HB3 L:CYS49 2.8 48.8 1.0
HB2 L:HIS52 2.8 50.2 1.0
CE1 L:HIS52 3.0 50.4 1.0
CG L:HIS52 3.1 40.1 1.0
CB L:CYS49 3.1 44.4 1.0
HE1 L:HIS52 3.1 51.5 1.0
CB L:CYS18 3.3 48.2 1.0
H L:CYS49 3.3 48.8 1.0
HB3 L:CYS18 3.3 51.6 1.0
HB2 L:CYS18 3.3 51.2 1.0
CB L:HIS52 3.4 47.4 1.0
CB L:CYS36 3.5 62.8 1.0
HB3 L:CYS36 3.5 60.6 1.0
HA L:CYS36 3.5 61.6 1.0
H L:HIS52 3.7 49.8 1.0
HB2 L:PHE20 3.8 52.5 1.0
HB2 L:CYS49 3.8 49.4 1.0
N L:CYS49 4.0 42.1 1.0
HB3 L:HIS52 4.0 50.0 1.0
CA L:CYS36 4.0 62.0 1.0
NE2 L:HIS52 4.1 56.8 1.0
CA L:CYS49 4.1 37.4 1.0
CD2 L:HIS52 4.2 48.1 1.0
HB2 L:ALA40 4.2 58.7 1.0
HB2 L:CYS36 4.3 61.8 1.0
N L:HIS52 4.4 45.8 1.0
HG13 L:ILE48 4.4 45.4 1.0
CA L:HIS52 4.5 46.2 1.0
HB1 L:ALA40 4.6 58.9 1.0
H L:PHE20 4.6 52.7 1.0
H L:SER37 4.7 59.0 1.0
O L:PRO35 4.7 69.4 1.0
CB L:PHE20 4.7 52.2 1.0
CA L:CYS18 4.7 48.4 1.0
HA L:ALA21 4.8 52.7 1.0
C L:CYS49 4.8 48.7 1.0
HD2 L:PHE20 4.9 52.2 1.0
HB2 L:ALA21 4.9 53.4 1.0
CB L:ALA40 4.9 54.9 1.0
C L:PHE20 4.9 54.4 1.0
HE2 L:HIS52 4.9 51.5 1.0
HA L:CYS49 4.9 47.2 1.0
HA L:ILE48 4.9 44.2 1.0
HG L:SER34 4.9 75.6 1.0
HB3 L:ASN51 4.9 52.5 1.0
N L:CYS36 4.9 62.1 1.0
N L:ALA21 5.0 51.8 1.0
HA L:HIS52 5.0 50.1 1.0
O L:CYS49 5.0 50.7 1.0

Zinc binding site 3 out of 8 in 8taf

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Zinc binding site 3 out of 8 in the Autographa Californica Multiple Nucleopolyhedrovirus VP39


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Autographa Californica Multiple Nucleopolyhedrovirus VP39 within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Zn401

b:119.1
occ:1.00
HG M:CYS18 1.1 53.8 1.0
ND1 M:HIS52 2.1 50.5 1.0
SG M:CYS36 2.3 66.4 1.0
SG M:CYS49 2.3 67.4 1.0
SG M:CYS18 2.3 52.9 1.0
HB3 M:CYS49 2.6 49.8 1.0
CE1 M:HIS52 2.9 52.2 1.0
HB2 M:HIS52 2.9 49.9 1.0
CB M:CYS49 3.0 40.5 1.0
CG M:HIS52 3.0 45.6 1.0
HE1 M:HIS52 3.1 52.5 1.0
H M:CYS49 3.2 50.9 1.0
CB M:CYS18 3.3 48.5 1.0
HB3 M:CYS18 3.3 53.4 1.0
HB2 M:CYS18 3.3 53.0 1.0
HA M:CYS36 3.4 64.0 1.0
CB M:HIS52 3.5 46.8 1.0
H M:HIS52 3.6 50.4 1.0
HB2 M:CYS49 3.6 50.9 1.0
CB M:CYS36 3.8 62.6 1.0
HB2 M:PHE20 3.8 49.6 1.0
N M:CYS49 3.9 43.8 1.0
NE2 M:HIS52 3.9 52.2 1.0
CA M:CYS49 4.0 40.9 1.0
CD2 M:HIS52 4.0 46.7 1.0
CA M:CYS36 4.1 62.8 1.0
HB3 M:HIS52 4.1 50.2 1.0
HB2 M:ALA40 4.2 60.5 1.0
HB3 M:CYS36 4.2 63.2 1.0
N M:HIS52 4.3 49.2 1.0
H M:SER37 4.4 57.7 1.0
HB2 M:CYS36 4.4 63.9 1.0
O M:PRO35 4.5 79.5 1.0
CA M:HIS52 4.5 44.9 1.0
H M:PHE20 4.6 49.7 1.0
HE2 M:HIS52 4.7 51.6 1.0
CB M:PHE20 4.7 46.0 1.0
C M:CYS49 4.7 47.5 1.0
CA M:CYS18 4.7 50.9 1.0
HA M:CYS49 4.8 50.2 1.0
HB2 M:ASN51 4.8 51.2 1.0
HB1 M:ALA40 4.8 60.5 1.0
O M:CYS49 4.8 55.7 1.0
HD2 M:PHE20 4.8 50.2 1.0
HG12 M:ILE48 4.8 42.8 1.0
HG13 M:ILE48 4.9 43.1 1.0
HD2 M:HIS52 4.9 49.1 1.0
HB3 M:PHE20 4.9 50.6 1.0
CB M:ALA40 4.9 58.8 1.0
HA M:ILE48 4.9 43.0 1.0
HB2 M:ALA21 5.0 52.4 1.0
HA M:ALA21 5.0 52.1 1.0
N M:SER37 5.0 58.0 1.0
HB3 M:ASN51 5.0 51.4 1.0
HA M:CYS18 5.0 53.9 1.0
HA M:HIS52 5.0 50.1 1.0

Zinc binding site 4 out of 8 in 8taf

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Zinc binding site 4 out of 8 in the Autographa Californica Multiple Nucleopolyhedrovirus VP39


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Autographa Californica Multiple Nucleopolyhedrovirus VP39 within 5.0Å range:
probe atom residue distance (Å) B Occ
N:Zn401

b:114.6
occ:1.00
HG N:CYS18 1.1 52.8 1.0
ND1 N:HIS52 2.0 41.8 1.0
SG N:CYS49 2.3 57.2 1.0
SG N:CYS36 2.3 61.3 1.0
SG N:CYS18 2.3 44.5 1.0
HB2 N:HIS52 2.8 47.9 1.0
HB3 N:CYS49 3.0 50.7 1.0
CE1 N:HIS52 3.0 46.1 1.0
CG N:HIS52 3.1 44.5 1.0
HE1 N:HIS52 3.2 50.4 1.0
H N:CYS49 3.2 50.3 1.0
CB N:CYS49 3.2 45.0 1.0
CB N:CYS18 3.3 52.7 1.0
HB2 N:CYS18 3.3 52.8 1.0
HB3 N:CYS18 3.3 53.2 1.0
HA N:CYS36 3.4 64.8 1.0
CB N:HIS52 3.4 44.6 1.0
CB N:CYS36 3.6 65.8 1.0
HB2 N:PHE20 3.7 50.7 1.0
H N:HIS52 3.8 47.5 1.0
HB3 N:CYS36 3.8 63.6 1.0
N N:CYS49 3.9 47.0 1.0
HB2 N:CYS49 4.0 51.2 1.0
HB3 N:HIS52 4.0 47.3 1.0
CA N:CYS36 4.0 63.9 1.0
NE2 N:HIS52 4.1 49.9 1.0
CA N:CYS49 4.2 46.1 1.0
HB2 N:ALA40 4.2 59.2 1.0
CD2 N:HIS52 4.2 45.3 1.0
HG13 N:ILE48 4.2 46.1 1.0
HB2 N:CYS36 4.4 65.1 1.0
N N:HIS52 4.4 43.4 1.0
O N:PRO35 4.5 82.1 1.0
H N:SER37 4.5 58.1 1.0
CA N:HIS52 4.6 43.5 1.0
HB1 N:ALA40 4.6 58.5 1.0
CB N:PHE20 4.6 52.7 1.0
H N:PHE20 4.6 49.4 1.0
CA N:CYS18 4.7 47.2 1.0
HB3 N:PHE20 4.8 50.3 1.0
HG12 N:ILE48 4.8 45.4 1.0
HA N:ILE48 4.8 45.0 1.0
HD2 N:PHE20 4.8 49.2 1.0
CB N:ALA40 4.9 57.3 1.0
C N:CYS49 4.9 50.7 1.0
HE2 N:HIS52 4.9 49.5 1.0
HA N:ALA21 4.9 51.5 1.0
C N:PHE20 4.9 47.7 1.0
HA N:CYS49 4.9 50.3 1.0
HA N:CYS18 5.0 52.3 1.0
CG1 N:ILE48 5.0 47.4 1.0
O N:CYS49 5.0 54.9 1.0
N N:CYS36 5.0 65.3 1.0

Zinc binding site 5 out of 8 in 8taf

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Zinc binding site 5 out of 8 in the Autographa Californica Multiple Nucleopolyhedrovirus VP39


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Autographa Californica Multiple Nucleopolyhedrovirus VP39 within 5.0Å range:
probe atom residue distance (Å) B Occ
O:Zn401

b:99.5
occ:1.00
HG O:CYS18 1.2 51.8 1.0
ND1 O:HIS52 2.1 40.2 1.0
SG O:CYS49 2.3 41.3 1.0
SG O:CYS18 2.3 50.7 1.0
SG O:CYS36 2.3 66.7 1.0
CE1 O:HIS52 2.7 47.0 1.0
HE1 O:HIS52 2.9 47.8 1.0
CG O:HIS52 3.0 38.9 1.0
HG O:CYS36 3.0 61.4 1.0
HA O:CYS36 3.0 63.7 1.0
HB2 O:HIS52 3.1 45.9 1.0
HB3 O:CYS18 3.2 51.3 1.0
CB O:CYS18 3.2 46.4 1.0
HG O:CYS49 3.3 46.5 1.0
HB2 O:CYS18 3.3 50.5 1.0
H O:CYS49 3.3 45.2 1.0
CB O:CYS36 3.4 61.7 1.0
HB3 O:CYS49 3.4 46.9 1.0
HB3 O:CYS36 3.5 62.8 1.0
CB O:CYS49 3.5 43.8 1.0
HB2 O:PHE20 3.6 49.6 1.0
CB O:HIS52 3.6 46.0 1.0
CA O:CYS36 3.7 59.1 1.0
NE2 O:HIS52 3.7 45.8 1.0
CD2 O:HIS52 3.9 35.6 1.0
H O:HIS52 4.0 45.0 1.0
N O:CYS49 4.1 41.5 1.0
HB3 O:HIS52 4.1 45.2 1.0
HB2 O:CYS36 4.2 63.8 1.0
HB2 O:CYS49 4.2 48.3 1.0
HB2 O:ALA40 4.4 55.2 1.0
O O:CYS36 4.4 71.9 1.0
CA O:CYS49 4.4 31.5 1.0
H O:PHE20 4.4 49.3 1.0
HE2 O:HIS52 4.4 46.4 1.0
HG13 O:ILE48 4.4 43.1 1.0
CB O:PHE20 4.4 48.6 1.0
O O:PRO35 4.5 77.9 1.0
C O:CYS36 4.5 60.8 1.0
HB3 O:PHE20 4.6 49.8 1.0
HA O:ALA21 4.6 48.3 1.0
C O:PHE20 4.6 45.1 1.0
HB2 O:ALA21 4.7 49.1 1.0
N O:HIS52 4.7 39.9 1.0
CA O:CYS18 4.7 44.8 1.0
HD2 O:HIS52 4.7 43.9 1.0
N O:ALA21 4.7 40.2 1.0
N O:CYS36 4.7 65.3 1.0
CA O:HIS52 4.7 37.4 1.0
HA O:ILE48 4.8 41.7 1.0
O O:PHE20 4.9 47.8 1.0
H O:ALA21 4.9 47.7 1.0
HD2 O:PHE20 4.9 48.6 1.0
HB1 O:ALA40 4.9 56.1 1.0
OD1 O:ASN16 4.9 57.0 1.0
CA O:PHE20 4.9 47.8 1.0
N O:PHE20 5.0 45.4 1.0

Zinc binding site 6 out of 8 in 8taf

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Zinc binding site 6 out of 8 in the Autographa Californica Multiple Nucleopolyhedrovirus VP39


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Autographa Californica Multiple Nucleopolyhedrovirus VP39 within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Zn401

b:116.5
occ:1.00
HG P:CYS18 1.1 51.6 1.0
ND1 P:HIS52 2.1 51.3 1.0
SG P:CYS49 2.3 58.3 1.0
SG P:CYS36 2.3 67.8 1.0
SG P:CYS18 2.3 53.4 1.0
HB3 P:CYS49 2.6 50.3 1.0
HB2 P:HIS52 2.7 51.1 1.0
CG P:HIS52 2.9 43.2 1.0
CE1 P:HIS52 2.9 52.4 1.0
CB P:CYS49 3.0 46.5 1.0
H P:CYS49 3.2 50.2 1.0
HE1 P:HIS52 3.2 52.6 1.0
CB P:CYS18 3.3 45.3 1.0
CB P:HIS52 3.3 48.9 1.0
HB2 P:CYS18 3.3 50.4 1.0
HB3 P:CYS18 3.3 50.8 1.0
HA P:CYS36 3.4 65.9 1.0
H P:HIS52 3.6 51.0 1.0
CB P:CYS36 3.6 68.2 1.0
HB2 P:CYS49 3.7 51.0 1.0
HB3 P:CYS36 3.8 65.0 1.0
HB2 P:PHE20 3.8 50.0 1.0
N P:CYS49 3.9 47.5 1.0
HB3 P:HIS52 3.9 50.9 1.0
NE2 P:HIS52 3.9 56.8 1.0
CD2 P:HIS52 4.0 45.7 1.0
CA P:CYS49 4.0 41.1 1.0
CA P:CYS36 4.0 64.9 1.0
HB2 P:ALA40 4.2 58.0 1.0
N P:HIS52 4.3 47.2 1.0
HB2 P:CYS36 4.4 66.3 1.0
CA P:HIS52 4.4 50.0 1.0
H P:SER37 4.4 57.6 1.0
O P:PRO35 4.4 76.4 1.0
HG13 P:ILE48 4.5 42.1 1.0
C P:CYS49 4.7 51.7 1.0
CB P:PHE20 4.7 46.8 1.0
HE2 P:HIS52 4.7 53.3 1.0
H P:PHE20 4.7 49.8 1.0
CA P:CYS18 4.7 42.7 1.0
HA P:CYS49 4.8 48.7 1.0
O P:CYS49 4.8 51.2 1.0
HD2 P:HIS52 4.8 50.7 1.0
HB1 P:ALA40 4.8 57.8 1.0
HB3 P:PHE20 4.9 50.0 1.0
HG12 P:ILE48 4.9 42.8 1.0
HB2 P:ASN51 4.9 50.9 1.0
HA P:HIS52 4.9 51.5 1.0
HA P:ILE48 4.9 41.2 1.0
HA P:ALA21 4.9 51.7 1.0
HD2 P:PHE20 4.9 49.8 1.0
N P:CYS36 5.0 67.7 1.0
C P:PHE20 5.0 51.0 1.0
CB P:ALA40 5.0 57.0 1.0
HA P:CYS18 5.0 50.9 1.0

Zinc binding site 7 out of 8 in 8taf

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Zinc binding site 7 out of 8 in the Autographa Californica Multiple Nucleopolyhedrovirus VP39


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Autographa Californica Multiple Nucleopolyhedrovirus VP39 within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:Zn401

b:111.7
occ:1.00
HG Q:CYS18 1.1 52.8 1.0
HG Q:CYS49 1.7 50.9 1.0
ND1 Q:HIS52 2.1 46.1 1.0
SG Q:CYS49 2.3 63.3 1.0
SG Q:CYS36 2.3 60.5 1.0
SG Q:CYS18 2.3 57.6 1.0
CE1 Q:HIS52 2.8 40.7 1.0
HG Q:CYS36 3.0 57.8 1.0
CG Q:HIS52 3.0 41.9 1.0
HE1 Q:HIS52 3.0 46.3 1.0
HB2 Q:HIS52 3.0 45.5 1.0
HB3 Q:CYS49 3.1 48.2 1.0
HB3 Q:CYS18 3.2 52.2 1.0
CB Q:CYS18 3.2 47.9 1.0
HB2 Q:CYS18 3.3 51.6 1.0
H Q:CYS49 3.3 47.8 1.0
HA Q:CYS36 3.3 58.5 1.0
CB Q:CYS49 3.3 42.8 1.0
CB Q:HIS52 3.5 44.0 1.0
HB2 Q:PHE20 3.6 47.5 1.0
CB Q:CYS36 3.6 57.9 1.0
HB3 Q:CYS36 3.8 57.9 1.0
NE2 Q:HIS52 3.8 41.0 1.0
H Q:HIS52 3.8 45.5 1.0
CD2 Q:HIS52 3.9 36.6 1.0
CA Q:CYS36 4.0 55.1 1.0
N Q:CYS49 4.0 45.9 1.0
HB2 Q:CYS49 4.1 48.8 1.0
HG Q:SER34 4.1 69.8 1.0
HB3 Q:HIS52 4.1 44.9 1.0
CA Q:CYS49 4.3 45.0 1.0
HA Q:ALA21 4.4 50.0 1.0
HB2 Q:CYS36 4.4 59.0 1.0
HB2 Q:ALA40 4.4 57.5 1.0
N Q:HIS52 4.5 41.6 1.0
CB Q:PHE20 4.5 49.3 1.0
HE2 Q:HIS52 4.5 45.7 1.0
OG Q:SER34 4.5 73.2 1.0
H Q:PHE20 4.5 47.5 1.0
H Q:SER37 4.5 54.0 1.0
CA Q:HIS52 4.6 38.6 1.0
C Q:PHE20 4.6 46.4 1.0
CA Q:CYS18 4.7 44.0 1.0
N Q:ALA21 4.7 51.2 1.0
HB3 Q:PHE20 4.7 48.1 1.0
HD2 Q:HIS52 4.7 43.9 1.0
HD2 Q:PHE20 4.7 46.7 1.0
N Q:CYS36 4.8 58.7 1.0
HA Q:ILE48 4.8 40.9 1.0
HB2 Q:ALA21 4.8 51.7 1.0
HB1 Q:ALA40 4.8 57.0 1.0
HG12 Q:ILE48 4.8 41.2 1.0
O Q:PHE20 4.9 45.4 1.0
H Q:ALA21 4.9 50.9 1.0
HB2 Q:ASN51 4.9 50.0 1.0
HG13 Q:ILE48 4.9 42.6 1.0
CA Q:PHE20 5.0 46.4 1.0
HA Q:CYS18 5.0 51.7 1.0
H Q:CYS36 5.0 59.5 1.0
CA Q:ALA21 5.0 45.0 1.0
C Q:CYS49 5.0 46.2 1.0
OD1 Q:ASN16 5.0 60.2 1.0

Zinc binding site 8 out of 8 in 8taf

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Zinc binding site 8 out of 8 in the Autographa Californica Multiple Nucleopolyhedrovirus VP39


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Autographa Californica Multiple Nucleopolyhedrovirus VP39 within 5.0Å range:
probe atom residue distance (Å) B Occ
R:Zn401

b:111.8
occ:1.00
HG R:CYS18 1.2 43.9 1.0
HG R:CYS49 1.8 41.3 1.0
ND1 R:HIS52 2.1 41.5 1.0
SG R:CYS49 2.3 43.4 1.0
SG R:CYS36 2.3 54.7 1.0
SG R:CYS18 2.3 47.4 1.0
CE1 R:HIS52 2.9 39.5 1.0
HB2 R:HIS52 2.9 37.9 1.0
HG R:CYS36 2.9 50.9 1.0
CG R:HIS52 3.0 32.0 1.0
HB3 R:CYS49 3.0 40.5 1.0
HE1 R:HIS52 3.0 40.5 1.0
HB3 R:CYS18 3.1 43.4 1.0
CB R:CYS18 3.2 35.4 1.0
HB2 R:CYS18 3.2 43.0 1.0
H R:CYS49 3.2 38.5 1.0
CB R:CYS49 3.3 34.8 1.0
HA R:CYS36 3.4 52.5 1.0
CB R:HIS52 3.5 29.9 1.0
CB R:CYS36 3.6 55.1 1.0
HB2 R:PHE20 3.6 37.1 1.0
HB3 R:CYS36 3.8 52.4 1.0
H R:HIS52 3.9 38.3 1.0
NE2 R:HIS52 3.9 39.3 1.0
N R:CYS49 4.0 32.3 1.0
CD2 R:HIS52 4.0 34.7 1.0
CA R:CYS36 4.0 46.6 1.0
HB2 R:CYS49 4.0 39.8 1.0
HB3 R:HIS52 4.0 37.2 1.0
CA R:CYS49 4.2 35.5 1.0
HB2 R:ALA40 4.3 48.1 1.0
HB2 R:CYS36 4.4 54.9 1.0
HA R:ALA21 4.4 45.1 1.0
N R:HIS52 4.5 35.1 1.0
H R:PHE20 4.5 36.5 1.0
CB R:PHE20 4.5 35.8 1.0
CA R:HIS52 4.6 29.2 1.0
H R:SER37 4.6 47.8 1.0
CA R:CYS18 4.6 37.8 1.0
HE2 R:HIS52 4.6 38.3 1.0
HG13 R:ILE48 4.7 33.6 1.0
C R:PHE20 4.7 36.9 1.0
HB3 R:PHE20 4.8 38.4 1.0
HD2 R:PHE20 4.8 36.6 1.0
HG12 R:ILE48 4.8 33.3 1.0
HA R:ILE48 4.8 32.5 1.0
HB1 R:ALA40 4.8 48.1 1.0
N R:CYS36 4.8 51.5 1.0
HD2 R:HIS52 4.8 35.8 1.0
N R:ALA21 4.8 47.4 1.0
C R:CYS49 4.9 38.6 1.0
O R:PHE20 4.9 36.5 1.0
HA R:CYS18 4.9 43.9 1.0
H R:CYS36 5.0 54.5 1.0
HA R:CYS49 5.0 38.6 1.0

Reference:

F.M.C.Benning, S.Jenni, C.Y.Garcia, T.H.Nguyen, X.Zhang, L.H.Chao. Helical Reconstruction of VP39 Reveals Principles For Baculovirus Nucleocapsid Assembly Nat Commun V. 15 250 2024.
ISSN: ESSN 2041-1723
DOI: 10.1038/S41467-023-44596-Y
Page generated: Fri Aug 22 13:40:52 2025

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