Atomistry » Zinc » PDB 8slg-8svl » 8sn1
Atomistry »
  Zinc »
    PDB 8slg-8svl »
      8sn1 »

Zinc in PDB 8sn1: Cryo-Em Structure of the Human Nucleosome Core Particle in Complex with RNF168 and UBCH5C~Ub (UBCH5C Chemically Conjugated to Histone H2A. No Density For Ub.) (Class 6)

Enzymatic activity of Cryo-Em Structure of the Human Nucleosome Core Particle in Complex with RNF168 and UBCH5C~Ub (UBCH5C Chemically Conjugated to Histone H2A. No Density For Ub.) (Class 6)

All present enzymatic activity of Cryo-Em Structure of the Human Nucleosome Core Particle in Complex with RNF168 and UBCH5C~Ub (UBCH5C Chemically Conjugated to Histone H2A. No Density For Ub.) (Class 6):
2.3.2.23; 2.3.2.24; 2.3.2.27;

Zinc Binding Sites:

The binding sites of Zinc atom in the Cryo-Em Structure of the Human Nucleosome Core Particle in Complex with RNF168 and UBCH5C~Ub (UBCH5C Chemically Conjugated to Histone H2A. No Density For Ub.) (Class 6) (pdb code 8sn1). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Cryo-Em Structure of the Human Nucleosome Core Particle in Complex with RNF168 and UBCH5C~Ub (UBCH5C Chemically Conjugated to Histone H2A. No Density For Ub.) (Class 6), PDB code: 8sn1:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 8sn1

Go back to Zinc Binding Sites List in 8sn1
Zinc binding site 1 out of 2 in the Cryo-Em Structure of the Human Nucleosome Core Particle in Complex with RNF168 and UBCH5C~Ub (UBCH5C Chemically Conjugated to Histone H2A. No Density For Ub.) (Class 6)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of the Human Nucleosome Core Particle in Complex with RNF168 and UBCH5C~Ub (UBCH5C Chemically Conjugated to Histone H2A. No Density For Ub.) (Class 6) within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Zn301

b:87.7
occ:1.00
ND1 K:HIS33 2.1 70.6 1.0
SG K:CYS31 2.3 71.5 1.0
SG K:CYS54 2.3 65.2 1.0
SG K:CYS51 2.3 58.7 1.0
CE1 K:HIS33 2.8 70.6 1.0
CG K:HIS33 3.2 70.6 1.0
CB K:CYS51 3.3 58.7 1.0
CB K:CYS54 3.3 65.2 1.0
CB K:CYS31 3.3 71.5 1.0
N K:CYS54 3.6 65.2 1.0
CB K:HIS33 3.7 70.6 1.0
CA K:CYS54 4.0 65.2 1.0
NE2 K:HIS33 4.0 70.6 1.0
CD2 K:HIS33 4.2 70.6 1.0
C K:CYS54 4.5 65.2 1.0
CD1 K:LEU29 4.6 64.7 1.0
CB K:PHE53 4.6 63.2 1.0
CA K:CYS31 4.7 71.5 1.0
N K:ARG55 4.7 62.8 1.0
C K:PHE53 4.7 63.2 1.0
CA K:CYS51 4.7 58.7 1.0
N K:HIS33 4.9 70.6 1.0
CA K:HIS33 4.9 70.6 1.0
CB K:ARG56 5.0 51.7 1.0
C K:CYS31 5.0 71.5 1.0
N K:PHE53 5.0 63.2 1.0

Zinc binding site 2 out of 2 in 8sn1

Go back to Zinc Binding Sites List in 8sn1
Zinc binding site 2 out of 2 in the Cryo-Em Structure of the Human Nucleosome Core Particle in Complex with RNF168 and UBCH5C~Ub (UBCH5C Chemically Conjugated to Histone H2A. No Density For Ub.) (Class 6)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of the Human Nucleosome Core Particle in Complex with RNF168 and UBCH5C~Ub (UBCH5C Chemically Conjugated to Histone H2A. No Density For Ub.) (Class 6) within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Zn302

b:111.6
occ:1.00
SG K:CYS36 2.3 71.9 1.0
SG K:CYS39 2.3 70.4 1.0
SG K:CYS19 2.3 79.0 1.0
SG K:CYS16 2.3 77.7 1.0
CB K:CYS19 2.7 79.0 1.0
N K:CYS19 3.3 79.0 1.0
CA K:CYS19 3.6 79.0 1.0
CB K:CYS16 3.6 77.7 1.0
CB K:CYS39 3.9 70.4 1.0
CB K:CYS36 4.0 71.9 1.0
C K:ILE18 4.4 72.0 1.0
CB K:ILE18 4.4 72.0 1.0
N K:CYS39 4.7 70.4 1.0
N K:CYS36 4.7 71.9 1.0
CA K:CYS39 4.8 70.4 1.0
C K:CYS19 4.8 79.0 1.0
CA K:CYS36 4.8 71.9 1.0
CA K:ILE18 4.8 72.0 1.0
O K:CYS36 4.9 71.9 1.0
N K:ILE18 4.9 72.0 1.0
CA K:CYS16 5.0 77.7 1.0

Reference:

Q.Hu, M.V.Botuyan, D.Zhao, G.Cui, G.Mer. Cryo-Em Structure of the Human Nucleosome Core Particle in Complex with RNF168 and UBCH5C~Ub (UBCH5C Chemically Conjugated to Histone H2A. No Density For Ub.) (Class 6) To Be Published.
Page generated: Fri Aug 22 13:23:22 2025

Last articles

Zn in 9EHZ
Zn in 9EGV
Zn in 9EGW
Zn in 9EDL
Zn in 9EBZ
Zn in 9EA0
Zn in 9ED0
Zn in 9EAW
Zn in 9EAT
Zn in 9E8Z
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy