Zinc in PDB 8pvy: Cryo-Em Structure of the Human Brisc Dimer Complex Bound to Compound Fx-171-C

The structure of Cryo-Em Structure of the Human Brisc Dimer Complex Bound to Compound Fx-171-C also contains other interesting chemical elements:

Chlorine

(Cl)

8 atoms

The binding sites of Zinc atom in the Cryo-Em Structure of the Human Brisc Dimer Complex Bound to Compound Fx-171-C (pdb code 8pvy). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Cryo-Em Structure of the Human Brisc Dimer Complex Bound to Compound Fx-171-C, PDB code: 8pvy:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the Cryo-Em Structure of the Human Brisc Dimer Complex Bound to Compound Fx-171-C


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of the Human Brisc Dimer Complex Bound to Compound Fx-171-C within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:96.5 occ:1.00 CH2 A:TRP120 2.3 2.2 1.0 OD1 A:ASP135 3.1 29.8 1.0 CZ3 A:TRP120 3.2 1.2 1.0 CZ2 A:TRP120 3.3 2.4 1.0 CG A:ASP135 3.5 34.5 1.0 O A:VAL90 3.7 70.4 1.0 CA A:ASP135 3.8 34.7 1.0 CG1 A:VAL90 3.9 70.9 1.0 CB A:ASP135 4.0 30.1 1.0 CB A:THR138 4.0 11.9 1.0 CB A:VAL90 4.1 76.0 1.0 CE1 A:HIS122 4.1 7.8 1.0 OD2 A:ASP135 4.1 31.8 1.0 OG1 A:THR138 4.2 15.6 1.0 CG2 A:THR138 4.3 13.5 1.0 NE2 A:HIS122 4.3 4.6 1.0 O A:ASP135 4.4 34.4 1.0 ND1 A:HIS122 4.5 8.8 1.0 CE3 A:TRP120 4.5 9.0 1.0 CE2 A:TRP120 4.5 7.8 1.0 C A:VAL90 4.6 69.3 1.0 C A:ASP135 4.7 34.5 1.0 N A:ASP135 4.8 29.0 1.0 CD2 A:HIS122 4.8 4.5 1.0 CA A:VAL90 4.9 75.9 1.0 CG A:HIS122 4.9 6.3 1.0 O A:VAL134 4.9 24.2 1.0

Zinc binding site 2 out of 4 in the Cryo-Em Structure of the Human Brisc Dimer Complex Bound to Compound Fx-171-C


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of the Human Brisc Dimer Complex Bound to Compound Fx-171-C within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn401 b:6.0 occ:1.00 OD2 C:ASP135 2.1 8.2 1.0 NE2 C:HIS122 2.3 7.1 1.0 NE2 C:HIS124 2.3 6.7 1.0 CE1 C:HIS124 2.8 5.6 1.0 CD2 C:HIS122 3.0 2.5 1.0 CG C:ASP135 3.1 8.4 1.0 CD2 C:HIS124 3.3 7.5 1.0 OD1 C:ASP135 3.4 9.1 1.0 CE1 C:HIS122 3.5 5.5 1.0 ND1 C:HIS124 3.8 6.9 1.0 CG C:HIS124 4.1 1.1 1.0 CG C:HIS122 4.2 3.3 1.0 OD1 C:ASP88 4.4 23.3 1.0 OG C:SER132 4.4 7.4 1.0 CB C:ASP135 4.4 5.4 1.0 ND1 C:HIS122 4.4 9.5 1.0 CD1 C:ILE153 4.5 5.6 1.0 CG2 C:VAL90 4.8 19.1 1.0 O C:SER123 4.8 5.5 1.0

Zinc binding site 3 out of 4 in the Cryo-Em Structure of the Human Brisc Dimer Complex Bound to Compound Fx-171-C


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Cryo-Em Structure of the Human Brisc Dimer Complex Bound to Compound Fx-171-C within 5.0Å range: probe atom residue distance (Å) B Occ G:Zn401 b:131.7 occ:1.00 CH2 G:TRP120 2.3 10.0 1.0 CZ3 G:TRP120 3.0 7.3 1.0 O G:VAL90 3.3 79.9 1.0 CZ2 G:TRP120 3.4 1.3 1.0 CG G:ASP135 3.8 37.4 1.0 CA G:ASP135 3.8 37.0 1.0 CB G:VAL90 3.9 79.3 1.0 OD2 G:ASP135 4.0 42.9 1.0 CB G:ASP135 4.0 37.6 1.0 OD1 G:ASP135 4.1 36.3 1.0 OG1 G:THR138 4.1 34.1 1.0 C G:VAL90 4.2 82.8 1.0 CB G:THR138 4.2 32.2 1.0 CE1 G:HIS122 4.2 1.8 1.0 NE2 G:HIS122 4.3 5.3 1.0 CE3 G:TRP120 4.4 6.5 1.0 CG1 G:VAL90 4.4 84.5 1.0 ND1 G:HIS122 4.5 8.5 1.0 N G:ASP135 4.6 35.9 1.0 CG2 G:THR138 4.6 32.9 1.0 CA G:VAL90 4.6 87.9 1.0 CE2 G:TRP120 4.6 7.8 1.0 CD2 G:HIS122 4.6 7.5 1.0 O G:ASP135 4.7 37.4 1.0 CG G:HIS122 4.8 4.2 1.0 C G:ASP135 4.8 41.4 1.0 O G:VAL134 4.9 41.2 1.0 CG2 G:VAL90 4.9 84.8 1.0

Zinc binding site 4 out of 4 in the Cryo-Em Structure of the Human Brisc Dimer Complex Bound to Compound Fx-171-C


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Cryo-Em Structure of the Human Brisc Dimer Complex Bound to Compound Fx-171-C within 5.0Å range: probe atom residue distance (Å) B Occ I:Zn401 b:189.9 occ:1.00 O I:VAL90 2.1 24.1 1.0 CZ3 I:TRP120 2.3 7.4 1.0 CH2 I:TRP120 2.4 2.0 1.0 CB I:VAL90 2.6 23.3 1.0 C I:VAL90 2.7 19.8 1.0 CG1 I:VAL90 2.9 23.4 1.0 CA I:VAL90 3.1 21.3 1.0 CE3 I:TRP120 3.7 10.0 1.0 N I:GLU91 3.7 29.7 1.0 CZ2 I:TRP120 3.7 8.2 1.0 CG2 I:VAL90 3.9 23.3 1.0 N I:VAL90 4.0 20.6 1.0 CA I:GLU91 4.2 24.1 1.0 CG2 I:THR138 4.5 3.8 1.0 CE2 I:TRP120 4.6 0.7 1.0 CD2 I:TRP120 4.7 8.0 1.0 CG I:HIS122 4.7 5.2 1.0 CD2 I:HIS122 4.7 2.6 1.0 ND1 I:HIS122 4.8 7.7 1.0 NE2 I:HIS122 4.8 5.8 1.0 CE1 I:HIS122 4.9 8.6 1.0 CB I:THR138 4.9 7.1 1.0

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