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Zinc in PDB 8k1h: Crystal Structure of Ethylene Glycol-Bound Glycerol Dehydrogenase From Klebsiella Pneumoniae

Enzymatic activity of Crystal Structure of Ethylene Glycol-Bound Glycerol Dehydrogenase From Klebsiella Pneumoniae

All present enzymatic activity of Crystal Structure of Ethylene Glycol-Bound Glycerol Dehydrogenase From Klebsiella Pneumoniae:
1.1.1.6;

Protein crystallography data

The structure of Crystal Structure of Ethylene Glycol-Bound Glycerol Dehydrogenase From Klebsiella Pneumoniae, PDB code: 8k1h was solved by W.Kang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.95 / 2.10
Space group I 4 2 2
Cell size a, b, c (Å), α, β, γ (°) 179.732, 179.732, 84.923, 90, 90, 90
R / Rfree (%) 17 / 19.2

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Ethylene Glycol-Bound Glycerol Dehydrogenase From Klebsiella Pneumoniae (pdb code 8k1h). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Ethylene Glycol-Bound Glycerol Dehydrogenase From Klebsiella Pneumoniae, PDB code: 8k1h:

Zinc binding site 1 out of 1 in 8k1h

Go back to Zinc Binding Sites List in 8k1h
Zinc binding site 1 out of 1 in the Crystal Structure of Ethylene Glycol-Bound Glycerol Dehydrogenase From Klebsiella Pneumoniae


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Ethylene Glycol-Bound Glycerol Dehydrogenase From Klebsiella Pneumoniae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:29.4
occ:1.00
 O1 A:EDO403 1.9 39.6 1.0
OD1 A:ASP171 2.1 27.0 1.0
NE2 A:HIS254 2.2 27.7 1.0
NE2 A:HIS271 2.2 37.6 1.0
C2 A:EDO403 2.7 29.1 1.0
C1 A:EDO403 2.8 33.8 1.0
CG A:ASP171 2.8 31.4 1.0
OD2 A:ASP171 2.9 31.8 1.0
CE1 A:HIS254 3.1 28.5 1.0
CE1 A:HIS271 3.2 35.6 1.0
CD2 A:HIS271 3.2 33.3 1.0
CD2 A:HIS254 3.2 28.5 1.0
OD1 A:ASP121 3.8 39.3 1.0
CG2 A:VAL275 4.0 25.0 1.0
O2 A:EDO403 4.0 49.9 1.0
C5N A:NAD402 4.2 35.7 1.0
ND1 A:HIS254 4.3 25.2 1.0
CB A:ASP171 4.3 26.6 1.0
OD2 A:ASP121 4.3 36.8 1.0
ND1 A:HIS271 4.3 36.2 1.0
CG A:HIS254 4.3 29.4 1.0
CG A:HIS271 4.4 37.0 1.0
CG A:ASP121 4.4 34.3 1.0
O A:HOH510 4.7 32.1 1.0
CA A:ASP171 4.8 25.3 1.0
C4N A:NAD402 4.9 39.6 1.0
CG1 A:VAL275 4.9 22.1 1.0
CB A:VAL275 5.0 26.3 1.0

Reference:

G.S.Ko, T.Q.Nguyen, S.Kho, W.Kang. Crystal Structure of Glycerol Dehydrogenase From Klebsiella Pneumoniae J. Korean Chem. Soc. V. 68 32 2024.
DOI: 10.5012/JKCS.2024.68.1.32
Page generated: Fri Aug 22 11:38:09 2025

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