Zinc in PDB 8g7t: Cryo-Em Structure of Rnp End

All present enzymatic activity of Cryo-Em Structure of Rnp End:
2.3.2.27; 3.6.4.13;

The binding sites of Zinc atom in the Cryo-Em Structure of Rnp End (pdb code 8g7t). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Cryo-Em Structure of Rnp End, PDB code: 8g7t:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Cryo-Em Structure of Rnp End


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Rnp End within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1001 b:46.5 occ:1.00 SG A:CYS864 2.6 35.2 1.0 SG A:CYS810 2.6 24.1 1.0 SG A:CYS869 2.6 40.3 1.0 CB A:CYS813 2.7 31.3 1.0 CB A:CYS810 3.4 24.1 1.0 CB A:CYS869 3.6 40.3 1.0 N A:CYS813 3.6 31.3 1.0 CB A:CYS864 3.7 35.2 1.0 CA A:CYS813 3.7 31.3 1.0 SG A:CYS813 3.8 31.3 1.0 C A:CYS813 4.5 31.3 1.0 CZ2 A:TRP873 4.7 27.6 1.0 N A:LYS814 4.7 24.2 1.0 C A:LYS812 4.7 34.2 1.0 CB A:ARG866 4.7 49.4 1.0 NE1 A:TRP873 4.8 27.6 1.0 CB A:HIS871 4.8 27.4 1.0 CA A:CYS810 4.9 24.1 1.0 CB A:LYS812 4.9 34.2 1.0 CB A:ALA815 5.0 29.3 1.0 N A:LYS812 5.0 34.2 1.0 NE A:ARG866 5.0 49.4 1.0

Zinc binding site 2 out of 2 in the Cryo-Em Structure of Rnp End


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of Rnp End within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn1001 b:142.2 occ:1.00 SG C:CYS864 2.6 81.7 1.0 CB C:CYS813 2.6 74.1 1.0 SG C:CYS869 2.8 85.8 1.0 SG C:CYS810 3.2 60.5 1.0 SG C:CYS813 3.3 74.1 1.0 CB C:CYS864 3.5 81.7 1.0 CB C:CYS810 3.6 60.5 1.0 CB C:CYS869 3.8 85.8 1.0 CA C:CYS813 4.0 74.1 1.0 N C:CYS813 4.2 74.1 1.0 CZ2 C:TRP873 4.2 60.9 1.0 NE1 C:TRP873 4.4 60.9 1.0 CE2 C:TRP873 4.6 60.9 1.0 CG C:ARG866 4.6 99.9 1.0 CB C:HIS871 4.7 63.5 1.0 C C:CYS813 4.8 74.1 1.0 CB C:ARG866 4.9 99.9 1.0 CA C:CYS864 5.0 81.7 1.0 CG C:LYS812 5.0 71.0 1.0

W.Wang, A.M.Pyle. Cryo-Em Structure of Riplet:Rig-I:Dsrna Complex (End-Inter) To Be Published.