Zinc in PDB 7wum: Crystal Structure of Ubr Box From PRT6 (Rdg pH 8.5)

All present enzymatic activity of Crystal Structure of Ubr Box From PRT6 (Rdg pH 8.5):
2.3.2.27;

The structure of Crystal Structure of Ubr Box From PRT6 (Rdg pH 8.5), PDB code: 7wum was solved by M.C.Ho, C.C.Cao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.77 / 1.58
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	29.756, 29.756, 115.566, 90, 90, 120
R / Rfree (%)	17.9 / 21.1

The binding sites of Zinc atom in the Crystal Structure of Ubr Box From PRT6 (Rdg pH 8.5) (pdb code 7wum). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Crystal Structure of Ubr Box From PRT6 (Rdg pH 8.5), PDB code: 7wum:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in the Crystal Structure of Ubr Box From PRT6 (Rdg pH 8.5)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Ubr Box From PRT6 (Rdg pH 8.5) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:24.0 occ:1.00 ND1 A:HIS188 2.0 25.8 1.0 SG A:CYS185 2.3 24.8 1.0 SG A:CYS173 2.3 24.5 1.0 SG A:CYS150 2.4 20.8 1.0 CE1 A:HIS188 2.9 26.2 1.0 CG A:HIS188 3.1 32.9 1.0 CB A:CYS173 3.2 18.9 1.0 CB A:CYS185 3.3 24.4 1.0 CB A:CYS150 3.3 16.5 1.0 CB A:HIS188 3.5 31.4 1.0 CA A:CYS150 4.0 16.2 1.0 N A:CYS185 4.0 24.7 1.0 NE2 A:HIS188 4.1 28.9 1.0 CD2 A:HIS188 4.2 25.1 1.0 CA A:CYS185 4.2 27.2 1.0 O A:HOH336 4.3 29.9 1.0 ZN A:ZN202 4.3 21.4 1.0 N A:HIS188 4.3 30.1 1.0 CB A:CYS122 4.5 19.4 1.0 CA A:CYS173 4.5 20.8 1.0 O A:HOH339 4.5 36.5 1.0 CA A:HIS188 4.6 32.2 1.0 C A:CYS173 4.7 24.3 1.0 O A:CYS173 4.7 24.9 1.0 C A:CYS185 4.8 30.2 1.0 O A:CYS150 4.9 20.0 1.0 C A:CYS150 4.9 20.5 1.0 C A:ARG187 4.9 32.1 1.0 O A:CYS185 4.9 26.9 1.0 SG A:CYS122 4.9 23.3 1.0

Zinc binding site 2 out of 3 in the Crystal Structure of Ubr Box From PRT6 (Rdg pH 8.5)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Ubr Box From PRT6 (Rdg pH 8.5) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn202 b:21.4 occ:1.00 SG A:CYS122 2.3 23.3 1.0 SG A:CYS150 2.3 20.8 1.0 SG A:CYS171 2.3 20.1 1.0 SG A:CYS147 2.4 21.4 1.0 CB A:CYS122 3.0 19.4 1.0 CB A:CYS171 3.2 18.3 1.0 CB A:CYS150 3.2 16.5 1.0 CB A:CYS147 3.5 20.7 1.0 N A:CYS147 4.0 17.9 1.0 CB A:SER124 4.1 30.8 0.5 CB A:SER124 4.1 30.8 0.5 OG A:SER124 4.1 32.7 0.5 CB A:CYS173 4.2 18.9 1.0 O A:HOH339 4.2 36.5 1.0 ZN A:ZN201 4.3 24.0 1.0 CA A:CYS147 4.3 18.3 1.0 CA A:CYS150 4.4 16.2 1.0 N A:CYS150 4.4 20.7 1.0 CA A:CYS122 4.5 18.5 1.0 CE1 A:HIS188 4.5 26.2 1.0 CA A:CYS171 4.6 23.6 1.0 ND1 A:HIS188 4.8 25.8 1.0 O A:CYS147 4.9 19.9 1.0 OG A:SER124 4.9 32.4 0.5 C A:CYS147 4.9 19.9 1.0

Zinc binding site 3 out of 3 in the Crystal Structure of Ubr Box From PRT6 (Rdg pH 8.5)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of Ubr Box From PRT6 (Rdg pH 8.5) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn203 b:20.4 occ:1.00 ND1 A:HIS156 2.1 22.0 1.0 ND1 A:HIS159 2.1 24.6 1.0 SG A:CYS135 2.3 20.7 1.0 SG A:CYS138 2.3 22.9 1.0 CE1 A:HIS156 2.9 21.5 1.0 CE1 A:HIS159 3.0 22.8 1.0 CG A:HIS159 3.2 22.3 1.0 CG A:HIS156 3.2 18.1 1.0 CB A:CYS138 3.4 22.4 1.0 CB A:CYS135 3.4 21.6 1.0 CB A:HIS159 3.6 19.4 1.0 CB A:HIS156 3.7 23.9 1.0 N A:CYS138 3.9 22.9 1.0 NE2 A:HIS156 4.1 19.4 1.0 CB A:THR137 4.2 21.1 1.0 NE2 A:HIS159 4.2 24.7 1.0 CA A:CYS138 4.2 24.8 1.0 CD2 A:HIS159 4.3 20.3 1.0 CD2 A:HIS156 4.3 17.6 1.0 CA A:HIS156 4.3 23.1 1.0 C A:THR137 4.6 20.9 1.0 CG2 A:THR137 4.8 23.1 1.0 CA A:CYS135 4.8 21.1 1.0 O A:ASN155 4.8 22.8 1.0 CA A:THR137 4.8 20.5 1.0 CZ2 A:TRP179 4.9 18.9 1.0 OG1 A:THR137 5.0 19.9 1.0

M.C.Ho, C.C.Cao. Crystal Structure of Ubr Box From PRT6 To Be Published.