Zinc in PDB 7owx: Structure of Coiled-Coil Tetramer From Sars-Cov-2 Spike Stalk Region

The structure of Structure of Coiled-Coil Tetramer From Sars-Cov-2 Spike Stalk Region, PDB code: 7owx was solved by Z.Zivic, S.Hadzi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.85 / 1.93
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	45.14, 45.54, 47.9, 90, 90, 90
R / Rfree (%)	17.2 / 23.3

The binding sites of Zinc atom in the Structure of Coiled-Coil Tetramer From Sars-Cov-2 Spike Stalk Region (pdb code 7owx). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of Coiled-Coil Tetramer From Sars-Cov-2 Spike Stalk Region, PDB code: 7owx:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Structure of Coiled-Coil Tetramer From Sars-Cov-2 Spike Stalk Region


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Coiled-Coil Tetramer From Sars-Cov-2 Spike Stalk Region within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn1301 b:35.1 occ:1.00 OD2 C:ASP1184 1.9 30.0 1.0 CG C:ASP1184 3.0 31.9 1.0 CB C:ASP1184 3.5 31.0 1.0 OD1 C:ASP1184 4.1 25.6 1.0 O C:HOH1407 4.5 32.2 1.0 O C:GLN1180 4.5 28.4 1.0

Zinc binding site 2 out of 2 in the Structure of Coiled-Coil Tetramer From Sars-Cov-2 Spike Stalk Region


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of Coiled-Coil Tetramer From Sars-Cov-2 Spike Stalk Region within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn1302 b:27.4 occ:1.00 OD2 D:ASP1199 1.9 30.1 1.0 OE1 D:GLU1195 2.0 25.3 1.0 CG D:ASP1199 2.7 27.5 1.0 OD1 D:ASP1199 2.8 29.0 1.0 CD D:GLU1195 2.9 28.6 1.0 CG D:GLU1195 3.2 23.0 1.0 NZ C:LYS1181 3.9 32.9 1.0 NH1 C:ARG1185 4.0 24.4 1.0 OE2 D:GLU1195 4.1 28.3 1.0 NH2 C:ARG1185 4.1 23.1 1.0 CB D:ASP1199 4.2 23.2 1.0 O D:GLU1195 4.5 26.7 1.0 CZ C:ARG1185 4.6 26.0 1.0 CB D:GLU1195 4.7 27.1 1.0 CE C:LYS1181 4.9 28.8 1.0

Z.Zivic, Z.Strmsek, M.Novinec, J.Lah, S.Hadzi. Structural Polymorphism of Coiled-Coils From the Stalk Domain of Sars-Cov-2 Spike Protein. Faseb J. V. 36 22199 2022.
ISSN: ESSN 1530-6860
PubMed: 35157347
DOI: 10.1096/FJ.202101670R